Hb_005204_060

Information

Type -
Description -
Location Contig5204: 96735-101055
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005204_060 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_002094_060 0.0012159831 - - -
3 Hb_184964_010 0.0021823536 - - -
4 Hb_004324_140 0.0029050967 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
5 Hb_000905_020 0.0060743321 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
6 Hb_002289_030 0.0083361357 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]
7 Hb_009398_010 0.0096411887 - - Putative pectate lyase 2 [Glycine soja]
8 Hb_000383_030 0.0156324939 - - -
9 Hb_005389_180 0.0175738735 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
10 Hb_000022_210 0.0448639817 - - PREDICTED: uncharacterized protein LOC105638395 [Jatropha curcas]
11 Hb_009659_060 0.0453554849 - - cell wall invertase [Manihot esculenta]
12 Hb_002659_020 0.0473857356 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
13 Hb_004162_310 0.0724106265 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_007320_050 0.0787383712 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
15 Hb_014749_010 0.0862958919 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
16 Hb_005316_010 0.1020908569 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_000560_050 0.1260090299 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
18 Hb_002671_070 0.1272449272 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
19 Hb_005946_130 0.1272449272 - - -
20 Hb_001048_120 0.1290713448 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005204_060 Hb_005204_060 Hb_002094_060 Hb_002094_060 Hb_005204_060--Hb_002094_060 Hb_184964_010 Hb_184964_010 Hb_005204_060--Hb_184964_010 Hb_004324_140 Hb_004324_140 Hb_005204_060--Hb_004324_140 Hb_000905_020 Hb_000905_020 Hb_005204_060--Hb_000905_020 Hb_002289_030 Hb_002289_030 Hb_005204_060--Hb_002289_030 Hb_009398_010 Hb_009398_010 Hb_005204_060--Hb_009398_010 Hb_002094_060--Hb_184964_010 Hb_002094_060--Hb_004324_140 Hb_002094_060--Hb_000905_020 Hb_002094_060--Hb_002289_030 Hb_002094_060--Hb_009398_010 Hb_184964_010--Hb_004324_140 Hb_184964_010--Hb_000905_020 Hb_184964_010--Hb_002289_030 Hb_184964_010--Hb_009398_010 Hb_004324_140--Hb_000905_020 Hb_004324_140--Hb_002289_030 Hb_004324_140--Hb_009398_010 Hb_000383_030 Hb_000383_030 Hb_000905_020--Hb_000383_030 Hb_005389_180 Hb_005389_180 Hb_000905_020--Hb_005389_180 Hb_002289_030--Hb_009398_010 Hb_002289_030--Hb_000905_020 Hb_009398_010--Hb_000905_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00379489 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00725157 0

CAGE analysis