Hb_005205_020

Information

Type -
Description -
Location Contig5205: 32759-46080
Sequence    

Annotation

kegg
ID rcu:RCOM_0238700
description hypothetical protein
nr
ID XP_012080794.1
description PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
swissprot
ID Q641I1
description Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1
trembl
ID A0A067KEK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46683: 33196-46013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005205_020 0.0 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
2 Hb_007904_220 0.0658758603 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
3 Hb_001943_010 0.0702426434 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_002067_150 0.0850675746 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
5 Hb_001322_210 0.0933188534 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
6 Hb_001771_130 0.0938621002 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
7 Hb_025012_010 0.0944644663 - - PREDICTED: importin-4 [Vitis vinifera]
8 Hb_000739_220 0.0965296881 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
9 Hb_004452_100 0.0978314689 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
10 Hb_123777_030 0.0986045811 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
11 Hb_001871_040 0.0989621726 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
12 Hb_000743_050 0.0991925128 - - unnamed protein product [Vitis vinifera]
13 Hb_000136_150 0.1011420627 - - hypothetical protein VITISV_038366 [Vitis vinifera]
14 Hb_042487_010 0.1023961578 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
15 Hb_000977_180 0.1032031293 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
16 Hb_002028_170 0.1090062406 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
17 Hb_017075_010 0.1091684235 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
18 Hb_000627_080 0.1092007996 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_090804_010 0.1105627512 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_002039_010 0.1112375747 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_005205_020 Hb_005205_020 Hb_007904_220 Hb_007904_220 Hb_005205_020--Hb_007904_220 Hb_001943_010 Hb_001943_010 Hb_005205_020--Hb_001943_010 Hb_002067_150 Hb_002067_150 Hb_005205_020--Hb_002067_150 Hb_001322_210 Hb_001322_210 Hb_005205_020--Hb_001322_210 Hb_001771_130 Hb_001771_130 Hb_005205_020--Hb_001771_130 Hb_025012_010 Hb_025012_010 Hb_005205_020--Hb_025012_010 Hb_007904_220--Hb_025012_010 Hb_001221_040 Hb_001221_040 Hb_007904_220--Hb_001221_040 Hb_007904_220--Hb_002067_150 Hb_000436_040 Hb_000436_040 Hb_007904_220--Hb_000436_040 Hb_002028_170 Hb_002028_170 Hb_007904_220--Hb_002028_170 Hb_000370_030 Hb_000370_030 Hb_001943_010--Hb_000370_030 Hb_000184_130 Hb_000184_130 Hb_001943_010--Hb_000184_130 Hb_001943_010--Hb_025012_010 Hb_000316_030 Hb_000316_030 Hb_001943_010--Hb_000316_030 Hb_001943_010--Hb_001771_130 Hb_005977_090 Hb_005977_090 Hb_002067_150--Hb_005977_090 Hb_000568_040 Hb_000568_040 Hb_002067_150--Hb_000568_040 Hb_000600_070 Hb_000600_070 Hb_002067_150--Hb_000600_070 Hb_002067_150--Hb_025012_010 Hb_000780_220 Hb_000780_220 Hb_001322_210--Hb_000780_220 Hb_002291_070 Hb_002291_070 Hb_001322_210--Hb_002291_070 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_002471_210 Hb_002471_210 Hb_001322_210--Hb_002471_210 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_007849_020 Hb_007849_020 Hb_001322_210--Hb_007849_020 Hb_001437_180 Hb_001437_180 Hb_001771_130--Hb_001437_180 Hb_000011_080 Hb_000011_080 Hb_001771_130--Hb_000011_080 Hb_001871_040 Hb_001871_040 Hb_001771_130--Hb_001871_040 Hb_004734_060 Hb_004734_060 Hb_001771_130--Hb_004734_060 Hb_000386_030 Hb_000386_030 Hb_001771_130--Hb_000386_030 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_025012_010--Hb_000347_130 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7052 13.8887 2.40164 6.69377 29.9044 45.0599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3802 8.40754 20.7394 23.3891 12.1088

CAGE analysis