Hb_005207_040

Information

Type -
Description -
Location Contig5207: 28490-29707
Sequence    

Annotation

kegg
ID cam:101489355
description uncharacterized LOC101489355
nr
ID XP_004488930.1
description PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
swissprot
ID -
description -
trembl
ID A0A0B2Q5K1
description Uncharacterized protein OS=Glycine soja GN=glysoja_011730 PE=4 SV=1
Gene Ontology
ID GO:0008270
description transcription initiation factor tfiid subunit 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005207_040 0.0 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
2 Hb_002559_020 0.0489013629 transcription factor TF Family: TUB -
3 Hb_003688_120 0.0645683177 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
4 Hb_014102_010 0.0796580848 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_060783_010 0.0802680672 - - Chloride channel protein CLC-c [Populus trichocarpa]
6 Hb_169960_010 0.0894750576 - - -
7 Hb_001144_030 0.1013196467 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
8 Hb_036790_050 0.1071678782 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
9 Hb_000014_200 0.1217951409 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
10 Hb_012077_010 0.1273690471 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_000806_010 0.1294638255 - - PREDICTED: hevamine-A-like [Jatropha curcas]
12 Hb_000649_090 0.1378600415 - - unnamed protein product [Vitis vinifera]
13 Hb_006755_030 0.1545205793 - - BURP domain-containing protein, putative [Theobroma cacao]
14 Hb_022973_010 0.1566769355 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
15 Hb_000959_110 0.1615430536 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
16 Hb_184074_010 0.163247099 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
17 Hb_003371_280 0.1753764465 - - unnamed protein product [Vitis vinifera]
18 Hb_000300_650 0.1797899507 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
19 Hb_004713_040 0.1831668589 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
20 Hb_011519_040 0.1854258934 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]

Gene co-expression network

sample Hb_005207_040 Hb_005207_040 Hb_002559_020 Hb_002559_020 Hb_005207_040--Hb_002559_020 Hb_003688_120 Hb_003688_120 Hb_005207_040--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_005207_040--Hb_014102_010 Hb_060783_010 Hb_060783_010 Hb_005207_040--Hb_060783_010 Hb_169960_010 Hb_169960_010 Hb_005207_040--Hb_169960_010 Hb_001144_030 Hb_001144_030 Hb_005207_040--Hb_001144_030 Hb_002559_020--Hb_060783_010 Hb_036790_050 Hb_036790_050 Hb_002559_020--Hb_036790_050 Hb_002559_020--Hb_001144_030 Hb_002559_020--Hb_003688_120 Hb_002559_020--Hb_014102_010 Hb_003688_120--Hb_014102_010 Hb_000649_090 Hb_000649_090 Hb_003688_120--Hb_000649_090 Hb_000806_010 Hb_000806_010 Hb_003688_120--Hb_000806_010 Hb_003688_120--Hb_169960_010 Hb_014102_010--Hb_000806_010 Hb_014102_010--Hb_000649_090 Hb_014102_010--Hb_169960_010 Hb_060783_010--Hb_036790_050 Hb_060783_010--Hb_001144_030 Hb_060783_010--Hb_003688_120 Hb_060783_010--Hb_014102_010 Hb_000014_200 Hb_000014_200 Hb_169960_010--Hb_000014_200 Hb_169960_010--Hb_001144_030 Hb_169960_010--Hb_002559_020 Hb_001144_030--Hb_000014_200 Hb_001144_030--Hb_036790_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.439631 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.085029 0.326837

CAGE analysis