Hb_005211_090

Information

Type -
Description -
Location Contig5211: 56610-59383
Sequence    

Annotation

kegg
ID rcu:RCOM_0353340
description hypothetical protein
nr
ID XP_012082058.1
description PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
swissprot
ID Q9C6L8
description Aluminum-activated malate transporter 4 OS=Arabidopsis thaliana GN=ALMT4 PE=3 SV=1
trembl
ID A0A067JZI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18307 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46752: 57304-58205 , PASA_asmbl_46753: 58688-58984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_090 0.0 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
2 Hb_009627_040 0.063588944 - - Lipase class 3-related protein, putative [Theobroma cacao]
3 Hb_001514_070 0.0829463166 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000011_120 0.0831608681 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
5 Hb_002391_350 0.088149909 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
6 Hb_005237_040 0.0962761655 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
7 Hb_001329_110 0.0988761614 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
8 Hb_000276_030 0.1006964135 - - dimethylaniline monooxygenase, putative [Ricinus communis]
9 Hb_000236_050 0.1038364328 - - phosphate transporter [Manihot esculenta]
10 Hb_006711_020 0.1057909356 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
11 Hb_001660_040 0.1068733335 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
12 Hb_004884_200 0.1073641178 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
13 Hb_005116_010 0.1087351038 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
14 Hb_014037_010 0.1087611519 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
15 Hb_002870_010 0.1104636825 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
16 Hb_009785_010 0.1114497734 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
17 Hb_003090_180 0.1125097602 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
18 Hb_010519_020 0.1152079599 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
19 Hb_000934_290 0.1159309065 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007123_020 0.1199176268 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]

Gene co-expression network

sample Hb_005211_090 Hb_005211_090 Hb_009627_040 Hb_009627_040 Hb_005211_090--Hb_009627_040 Hb_001514_070 Hb_001514_070 Hb_005211_090--Hb_001514_070 Hb_000011_120 Hb_000011_120 Hb_005211_090--Hb_000011_120 Hb_002391_350 Hb_002391_350 Hb_005211_090--Hb_002391_350 Hb_005237_040 Hb_005237_040 Hb_005211_090--Hb_005237_040 Hb_001329_110 Hb_001329_110 Hb_005211_090--Hb_001329_110 Hb_009627_040--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_009627_040--Hb_005116_010 Hb_004884_200 Hb_004884_200 Hb_009627_040--Hb_004884_200 Hb_009627_040--Hb_002391_350 Hb_005010_040 Hb_005010_040 Hb_009627_040--Hb_005010_040 Hb_000393_030 Hb_000393_030 Hb_001514_070--Hb_000393_030 Hb_002870_010 Hb_002870_010 Hb_001514_070--Hb_002870_010 Hb_001470_040 Hb_001470_040 Hb_001514_070--Hb_001470_040 Hb_001514_070--Hb_001329_110 Hb_000963_010 Hb_000963_010 Hb_001514_070--Hb_000963_010 Hb_000011_120--Hb_001329_110 Hb_175758_010 Hb_175758_010 Hb_000011_120--Hb_175758_010 Hb_010839_010 Hb_010839_010 Hb_000011_120--Hb_010839_010 Hb_001318_120 Hb_001318_120 Hb_000011_120--Hb_001318_120 Hb_002391_350--Hb_004884_200 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_002391_350--Hb_005237_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_006711_020 Hb_006711_020 Hb_002391_350--Hb_006711_020 Hb_009785_010 Hb_009785_010 Hb_005237_040--Hb_009785_010 Hb_014037_010 Hb_014037_010 Hb_005237_040--Hb_014037_010 Hb_005237_040--Hb_004884_200 Hb_000236_050 Hb_000236_050 Hb_005237_040--Hb_000236_050 Hb_005237_040--Hb_006711_020 Hb_001329_110--Hb_175758_010 Hb_001329_110--Hb_001318_120 Hb_000840_050 Hb_000840_050 Hb_001329_110--Hb_000840_050 Hb_010519_020 Hb_010519_020 Hb_001329_110--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_001329_110--Hb_001421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.7746 5.34007 9.58935 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0228986 0.0360343 0 35.1708 5.78543

CAGE analysis