Hb_005211_100

Information

Type -
Description -
Location Contig5211: 62673-70056
Sequence    

Annotation

kegg
ID cic:CICLE_v10031047mg
description hypothetical protein
nr
ID XP_012082057.1
description PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
swissprot
ID Q38950
description Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2
trembl
ID A0A067KAU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18306 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46755: 61834-63032 , PASA_asmbl_46757: 66893-70075 , PASA_asmbl_46758: 69490-69737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_100 0.0 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
2 Hb_002783_240 0.0701229858 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
3 Hb_103012_010 0.0719509044 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
4 Hb_000116_500 0.0781100358 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
5 Hb_001488_410 0.080787884 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
6 Hb_000608_320 0.0852380118 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
7 Hb_004102_140 0.0856217939 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000313_260 0.0864232315 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_007059_010 0.086635458 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
10 Hb_002811_060 0.0876248827 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
11 Hb_005147_060 0.087646349 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
12 Hb_021297_050 0.0880457059 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
13 Hb_004994_040 0.0882692907 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
14 Hb_004732_020 0.0886234573 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
15 Hb_007426_150 0.0905928275 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
16 Hb_143629_110 0.0910694813 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
17 Hb_058643_010 0.0914176275 - - hydrolase, putative [Ricinus communis]
18 Hb_000193_190 0.0918620533 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
19 Hb_003966_030 0.0927565368 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
20 Hb_007803_050 0.0927932137 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_005211_100 Hb_005211_100 Hb_002783_240 Hb_002783_240 Hb_005211_100--Hb_002783_240 Hb_103012_010 Hb_103012_010 Hb_005211_100--Hb_103012_010 Hb_000116_500 Hb_000116_500 Hb_005211_100--Hb_000116_500 Hb_001488_410 Hb_001488_410 Hb_005211_100--Hb_001488_410 Hb_000608_320 Hb_000608_320 Hb_005211_100--Hb_000608_320 Hb_004102_140 Hb_004102_140 Hb_005211_100--Hb_004102_140 Hb_007059_010 Hb_007059_010 Hb_002783_240--Hb_007059_010 Hb_002783_240--Hb_103012_010 Hb_040262_010 Hb_040262_010 Hb_002783_240--Hb_040262_010 Hb_001946_010 Hb_001946_010 Hb_002783_240--Hb_001946_010 Hb_000345_240 Hb_000345_240 Hb_002783_240--Hb_000345_240 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_002811_060 Hb_002811_060 Hb_000116_500--Hb_002811_060 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_012022_090 Hb_012022_090 Hb_000116_500--Hb_012022_090 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_002027_290 Hb_002027_290 Hb_000608_320--Hb_002027_290 Hb_000318_290 Hb_000318_290 Hb_000608_320--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_000608_320--Hb_005170_040 Hb_003777_310 Hb_003777_310 Hb_000608_320--Hb_003777_310 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_000608_320--Hb_002811_060 Hb_003966_030 Hb_003966_030 Hb_004102_140--Hb_003966_030 Hb_001617_060 Hb_001617_060 Hb_004102_140--Hb_001617_060 Hb_003362_070 Hb_003362_070 Hb_004102_140--Hb_003362_070 Hb_000820_170 Hb_000820_170 Hb_004102_140--Hb_000820_170 Hb_004096_100 Hb_004096_100 Hb_004102_140--Hb_004096_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1349 10.5499 10.7125 15.9374 26.3818 26.6453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1764 9.10507 15.6522 17.1044 9.42658

CAGE analysis