Hb_005211_150

Information

Type transcription factor
Description TF Family: bZIP
Location Contig5211: 132075-137032
Sequence    

Annotation

kegg
ID tcc:TCM_011845
description BZIP transcription factor family protein isoform 1
nr
ID XP_012082054.1
description PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
swissprot
ID Q9SX27
description Transcription factor PERIANTHIA OS=Arabidopsis thaliana GN=PAN PE=1 SV=1
trembl
ID A0A067KAU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18301 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor hbp-1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46759: 131743-132959 , PASA_asmbl_46761: 134068-136786 , PASA_asmbl_46762: 134084-136767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_150 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
2 Hb_176472_020 0.1642402823 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002218_100 0.1951292009 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
4 Hb_000577_050 0.2052842005 - - -
5 Hb_003938_170 0.2168973826 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
6 Hb_007545_110 0.2179658313 - - catalytic, putative [Ricinus communis]
7 Hb_000175_300 0.2185868273 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
8 Hb_000120_350 0.2196047156 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
9 Hb_032202_130 0.2237668699 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
10 Hb_000739_270 0.223828039 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
11 Hb_003667_020 0.2240661202 - - conserved hypothetical protein 16 [Hevea brasiliensis]
12 Hb_000190_220 0.2262861361 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
13 Hb_005946_020 0.2265373439 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
14 Hb_003599_060 0.2266015512 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_000028_250 0.2284632808 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
16 Hb_033594_040 0.2308115787 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
17 Hb_031266_030 0.2319719028 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
18 Hb_004046_060 0.2320592328 - - PREDICTED: protein CDI [Jatropha curcas]
19 Hb_003401_010 0.2322694253 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
20 Hb_000521_190 0.232532927 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]

Gene co-expression network

sample Hb_005211_150 Hb_005211_150 Hb_176472_020 Hb_176472_020 Hb_005211_150--Hb_176472_020 Hb_002218_100 Hb_002218_100 Hb_005211_150--Hb_002218_100 Hb_000577_050 Hb_000577_050 Hb_005211_150--Hb_000577_050 Hb_003938_170 Hb_003938_170 Hb_005211_150--Hb_003938_170 Hb_007545_110 Hb_007545_110 Hb_005211_150--Hb_007545_110 Hb_000175_300 Hb_000175_300 Hb_005211_150--Hb_000175_300 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060 Hb_000563_440 Hb_000563_440 Hb_002218_100--Hb_000563_440 Hb_000123_140 Hb_000123_140 Hb_002218_100--Hb_000123_140 Hb_000120_350 Hb_000120_350 Hb_002218_100--Hb_000120_350 Hb_000959_190 Hb_000959_190 Hb_002218_100--Hb_000959_190 Hb_004125_060 Hb_004125_060 Hb_002218_100--Hb_004125_060 Hb_000656_320 Hb_000656_320 Hb_000577_050--Hb_000656_320 Hb_006060_010 Hb_006060_010 Hb_000577_050--Hb_006060_010 Hb_001775_090 Hb_001775_090 Hb_000577_050--Hb_001775_090 Hb_003599_060 Hb_003599_060 Hb_000577_050--Hb_003599_060 Hb_002217_370 Hb_002217_370 Hb_000577_050--Hb_002217_370 Hb_001541_190 Hb_001541_190 Hb_000577_050--Hb_001541_190 Hb_003430_040 Hb_003430_040 Hb_003938_170--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_003938_170--Hb_003874_010 Hb_000032_200 Hb_000032_200 Hb_003938_170--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003938_170--Hb_001198_080 Hb_001214_190 Hb_001214_190 Hb_003938_170--Hb_001214_190 Hb_000347_140 Hb_000347_140 Hb_003938_170--Hb_000347_140 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_000260_610 Hb_000260_610 Hb_007545_110--Hb_000260_610 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_007545_110--Hb_000032_200 Hb_000175_300--Hb_001541_190 Hb_000069_300 Hb_000069_300 Hb_000175_300--Hb_000069_300 Hb_000190_220 Hb_000190_220 Hb_000175_300--Hb_000190_220 Hb_001307_020 Hb_001307_020 Hb_000175_300--Hb_001307_020 Hb_001633_160 Hb_001633_160 Hb_000175_300--Hb_001633_160 Hb_004679_040 Hb_004679_040 Hb_000175_300--Hb_004679_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108775 0.838373 4.41254 1.5699 0.272984 0.0422708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.597917 0.313589 0.0489936 0 0.381809

CAGE analysis