Hb_005211_160

Information

Type -
Description -
Location Contig5211: 143496-147977
Sequence    

Annotation

kegg
ID rcu:RCOM_0353730
description Protein PNS1, putative
nr
ID XP_002529146.1
description Protein PNS1, putative [Ricinus communis]
swissprot
ID Q869R1
description CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1
trembl
ID B9ST27
description Protein PNS1, putative OS=Ricinus communis GN=RCOM_0353730 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ctl-like protein ddb_g0274487

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46763: 143565-145716 , PASA_asmbl_46765: 145740-147866 , PASA_asmbl_46766: 145993-147944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_160 0.0 - - Protein PNS1, putative [Ricinus communis]
2 Hb_000139_380 0.1359036007 - - conserved hypothetical protein [Ricinus communis]
3 Hb_170193_010 0.1376739826 - - JHL25H03.10 [Jatropha curcas]
4 Hb_000041_150 0.1492928492 - - Stachyose synthase precursor, putative [Ricinus communis]
5 Hb_127003_010 0.1522451086 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
6 Hb_085863_020 0.1633532281 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
7 Hb_000080_190 0.1637259647 - - -
8 Hb_032215_050 0.1666543739 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
9 Hb_006922_030 0.1688344968 - - ubiquitin, putative [Ricinus communis]
10 Hb_188279_010 0.1696725437 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
11 Hb_002903_090 0.1706067016 - - sugar transporter, putative [Ricinus communis]
12 Hb_000397_100 0.1713349538 - - hypothetical protein 31 [Hevea brasiliensis]
13 Hb_001085_170 0.172597848 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
14 Hb_004046_020 0.173980704 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
15 Hb_007064_040 0.1762758411 - - hypothetical protein RCOM_0254640 [Ricinus communis]
16 Hb_000092_010 0.1780743186 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
17 Hb_000138_110 0.1787520824 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
18 Hb_002299_060 0.179099619 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
19 Hb_011287_090 0.1793962941 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
20 Hb_000330_100 0.1796327329 - - hypothetical protein VITISV_011650 [Vitis vinifera]

Gene co-expression network

sample Hb_005211_160 Hb_005211_160 Hb_000139_380 Hb_000139_380 Hb_005211_160--Hb_000139_380 Hb_170193_010 Hb_170193_010 Hb_005211_160--Hb_170193_010 Hb_000041_150 Hb_000041_150 Hb_005211_160--Hb_000041_150 Hb_127003_010 Hb_127003_010 Hb_005211_160--Hb_127003_010 Hb_085863_020 Hb_085863_020 Hb_005211_160--Hb_085863_020 Hb_000080_190 Hb_000080_190 Hb_005211_160--Hb_000080_190 Hb_006935_050 Hb_006935_050 Hb_000139_380--Hb_006935_050 Hb_098993_010 Hb_098993_010 Hb_000139_380--Hb_098993_010 Hb_000025_480 Hb_000025_480 Hb_000139_380--Hb_000025_480 Hb_000139_380--Hb_000080_190 Hb_011287_090 Hb_011287_090 Hb_000139_380--Hb_011287_090 Hb_005280_010 Hb_005280_010 Hb_000139_380--Hb_005280_010 Hb_170193_010--Hb_000139_380 Hb_170193_010--Hb_127003_010 Hb_170193_010--Hb_085863_020 Hb_002326_050 Hb_002326_050 Hb_170193_010--Hb_002326_050 Hb_170193_010--Hb_011287_090 Hb_153258_010 Hb_153258_010 Hb_000041_150--Hb_153258_010 Hb_000041_150--Hb_127003_010 Hb_000997_210 Hb_000997_210 Hb_000041_150--Hb_000997_210 Hb_000187_090 Hb_000187_090 Hb_000041_150--Hb_000187_090 Hb_001221_170 Hb_001221_170 Hb_000041_150--Hb_001221_170 Hb_000120_050 Hb_000120_050 Hb_000041_150--Hb_000120_050 Hb_182424_010 Hb_182424_010 Hb_127003_010--Hb_182424_010 Hb_127003_010--Hb_153258_010 Hb_127003_010--Hb_000139_380 Hb_127003_010--Hb_098993_010 Hb_022148_010 Hb_022148_010 Hb_085863_020--Hb_022148_010 Hb_085863_020--Hb_000139_380 Hb_085863_020--Hb_127003_010 Hb_001004_040 Hb_001004_040 Hb_085863_020--Hb_001004_040 Hb_085863_020--Hb_011287_090 Hb_002687_110 Hb_002687_110 Hb_000080_190--Hb_002687_110 Hb_005625_020 Hb_005625_020 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_004738_040 Hb_004738_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000409_020 Hb_000409_020 Hb_000080_190--Hb_000409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.352 3.74814 5.16091 11.7783 12.9605 18.3142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71178 8.93443 46.2456 8.05393 6.45641

CAGE analysis