Hb_005211_210

Information

Type -
Description -
Location Contig5211: 191255-199797
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13840g
description POPTRDRAFT_833630; lysine and histidine specific transporter family protein
nr
ID XP_002315954.2
description lysine and histidine specific transporter family protein [Populus trichocarpa]
swissprot
ID Q9C6M2
description Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1
trembl
ID B9HWL0
description Lysine and histidine specific transporter family protein OS=Populus trichocarpa GN=POPTR_0010s13840g PE=4 SV=2
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46773: 191126-191787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_210 0.0 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
2 Hb_002193_080 0.069429734 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
3 Hb_008689_010 0.0694908239 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
4 Hb_002043_070 0.0755136373 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
5 Hb_000201_010 0.0800367971 - - unnamed protein product [Vitis vinifera]
6 Hb_005675_070 0.0826762675 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
7 Hb_000434_060 0.0835310619 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
8 Hb_002168_070 0.0991068562 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
9 Hb_158189_010 0.1000874328 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
10 Hb_009771_040 0.1089733167 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
11 Hb_001242_040 0.1092129167 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
12 Hb_001541_210 0.1096587699 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
13 Hb_003050_330 0.1118222445 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
14 Hb_001405_170 0.1140184585 - - aspartyl protease family protein [Populus trichocarpa]
15 Hb_002053_190 0.1155733039 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
16 Hb_001289_010 0.1168581068 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
17 Hb_000620_040 0.1175961977 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_015934_090 0.1189107349 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
19 Hb_003893_130 0.123234568 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_003008_020 0.1242376048 - - auxin-responsive family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005211_210 Hb_005211_210 Hb_002193_080 Hb_002193_080 Hb_005211_210--Hb_002193_080 Hb_008689_010 Hb_008689_010 Hb_005211_210--Hb_008689_010 Hb_002043_070 Hb_002043_070 Hb_005211_210--Hb_002043_070 Hb_000201_010 Hb_000201_010 Hb_005211_210--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_005211_210--Hb_005675_070 Hb_000434_060 Hb_000434_060 Hb_005211_210--Hb_000434_060 Hb_002193_080--Hb_008689_010 Hb_003050_330 Hb_003050_330 Hb_002193_080--Hb_003050_330 Hb_003008_020 Hb_003008_020 Hb_002193_080--Hb_003008_020 Hb_002193_080--Hb_000201_010 Hb_002193_080--Hb_005675_070 Hb_008689_010--Hb_003008_020 Hb_008689_010--Hb_003050_330 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_002168_070 Hb_002168_070 Hb_002043_070--Hb_002168_070 Hb_002053_190 Hb_002053_190 Hb_002043_070--Hb_002053_190 Hb_002890_330 Hb_002890_330 Hb_002043_070--Hb_002890_330 Hb_002043_070--Hb_000434_060 Hb_009771_040 Hb_009771_040 Hb_002043_070--Hb_009771_040 Hb_000201_010--Hb_008689_010 Hb_000258_230 Hb_000258_230 Hb_000201_010--Hb_000258_230 Hb_000201_010--Hb_002043_070 Hb_000201_010--Hb_003050_330 Hb_158189_010 Hb_158189_010 Hb_005675_070--Hb_158189_010 Hb_001541_210 Hb_001541_210 Hb_005675_070--Hb_001541_210 Hb_003893_130 Hb_003893_130 Hb_005675_070--Hb_003893_130 Hb_077774_010 Hb_077774_010 Hb_005675_070--Hb_077774_010 Hb_000434_060--Hb_002168_070 Hb_000434_060--Hb_009771_040 Hb_005051_010 Hb_005051_010 Hb_000434_060--Hb_005051_010 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.00796 2.44205 5.97503 0.0068313 0.0382725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0260636 0 0.124147 4.93718

CAGE analysis