Hb_005214_020

Information

Type -
Description -
Location Contig5214: 35664-36889
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019926mg
description hypothetical protein
nr
ID KDP33337.1
description hypothetical protein JCGZ_12886 [Jatropha curcas]
swissprot
ID Q3EA00
description Putative F-box protein At4g17565 OS=Arabidopsis thaliana GN=At4g17565 PE=4 SV=1
trembl
ID A0A067KB34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12886 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_020 0.0 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
2 Hb_003658_030 0.1420760223 - - -
3 Hb_176121_010 0.1941624727 - - -
4 Hb_000175_550 0.231509389 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
5 Hb_000701_070 0.2472009625 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_001501_050 0.2559287354 - - Wall associated kinase-like 6, putative [Theobroma cacao]
7 Hb_001623_440 0.2827031956 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
8 Hb_027337_070 0.2849057032 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
9 Hb_000684_170 0.2898842711 - - -
10 Hb_000407_060 0.2990398794 - - -
11 Hb_089341_010 0.3108649138 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
12 Hb_004361_030 0.3111425046 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
13 Hb_002367_120 0.3153930773 - - -
14 Hb_088176_010 0.3210151003 - - -
15 Hb_172632_020 0.3300991178 - - -
16 Hb_004483_020 0.3314276653 - - -
17 Hb_097433_020 0.3328926732 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_001854_010 0.3334320944 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_000243_100 0.3376689636 - - Purple acid phosphatase precursor, putative [Ricinus communis]
20 Hb_004162_110 0.3376734283 - - hypothetical protein JCGZ_05404 [Jatropha curcas]

Gene co-expression network

sample Hb_005214_020 Hb_005214_020 Hb_003658_030 Hb_003658_030 Hb_005214_020--Hb_003658_030 Hb_176121_010 Hb_176121_010 Hb_005214_020--Hb_176121_010 Hb_000175_550 Hb_000175_550 Hb_005214_020--Hb_000175_550 Hb_000701_070 Hb_000701_070 Hb_005214_020--Hb_000701_070 Hb_001501_050 Hb_001501_050 Hb_005214_020--Hb_001501_050 Hb_001623_440 Hb_001623_440 Hb_005214_020--Hb_001623_440 Hb_003658_030--Hb_000701_070 Hb_003658_030--Hb_176121_010 Hb_003658_030--Hb_000175_550 Hb_003658_030--Hb_001623_440 Hb_123304_010 Hb_123304_010 Hb_003658_030--Hb_123304_010 Hb_176121_010--Hb_000175_550 Hb_176121_010--Hb_000701_070 Hb_011942_030 Hb_011942_030 Hb_176121_010--Hb_011942_030 Hb_002897_020 Hb_002897_020 Hb_176121_010--Hb_002897_020 Hb_000175_550--Hb_000701_070 Hb_002367_120 Hb_002367_120 Hb_000175_550--Hb_002367_120 Hb_104498_030 Hb_104498_030 Hb_000175_550--Hb_104498_030 Hb_000701_070--Hb_123304_010 Hb_000893_030 Hb_000893_030 Hb_000701_070--Hb_000893_030 Hb_000684_170 Hb_000684_170 Hb_001501_050--Hb_000684_170 Hb_001218_080 Hb_001218_080 Hb_001501_050--Hb_001218_080 Hb_156850_110 Hb_156850_110 Hb_001501_050--Hb_156850_110 Hb_007292_030 Hb_007292_030 Hb_001501_050--Hb_007292_030 Hb_113388_010 Hb_113388_010 Hb_001501_050--Hb_113388_010 Hb_003849_230 Hb_003849_230 Hb_001501_050--Hb_003849_230 Hb_057486_010 Hb_057486_010 Hb_001623_440--Hb_057486_010 Hb_027337_070 Hb_027337_070 Hb_001623_440--Hb_027337_070 Hb_001032_040 Hb_001032_040 Hb_001623_440--Hb_001032_040 Hb_012150_050 Hb_012150_050 Hb_001623_440--Hb_012150_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0578806 0.0249956 0 0 0.0388732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis