Hb_005214_060

Information

Type -
Description -
Location Contig5214: 52204-57401
Sequence    

Annotation

kegg
ID rcu:RCOM_0817300
description catalytic, putative
nr
ID XP_002518318.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FGF0
description Phosphoglycerate mutase-like protein 1 OS=Arabidopsis thaliana GN=At5g64460 PE=2 SV=1
trembl
ID B9RX49
description Catalytic, putative OS=Ricinus communis GN=RCOM_0817300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46779: 52133-57352 , PASA_asmbl_46780: 52873-53106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_060 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_009913_050 0.064654391 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
3 Hb_002942_080 0.0799061992 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
4 Hb_002675_060 0.08208785 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
5 Hb_000213_070 0.0826955451 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
6 Hb_000331_190 0.0841591021 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
7 Hb_024990_010 0.085745992 - - PREDICTED: la protein 1 [Jatropha curcas]
8 Hb_007668_040 0.09079823 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
9 Hb_002411_180 0.0928189686 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
10 Hb_001301_210 0.0929573263 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
11 Hb_000120_510 0.0931102383 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
12 Hb_002048_090 0.0936103999 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
13 Hb_000343_230 0.0948561316 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
14 Hb_002883_010 0.0963453533 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
15 Hb_001396_290 0.0964070872 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
16 Hb_021409_170 0.0964742334 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_000035_040 0.0965853473 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
18 Hb_000531_090 0.0974532289 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
19 Hb_001196_070 0.0985309787 - - nucleolar protein nop56, putative [Ricinus communis]
20 Hb_001221_040 0.1015519711 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]

Gene co-expression network

sample Hb_005214_060 Hb_005214_060 Hb_009913_050 Hb_009913_050 Hb_005214_060--Hb_009913_050 Hb_002942_080 Hb_002942_080 Hb_005214_060--Hb_002942_080 Hb_002675_060 Hb_002675_060 Hb_005214_060--Hb_002675_060 Hb_000213_070 Hb_000213_070 Hb_005214_060--Hb_000213_070 Hb_000331_190 Hb_000331_190 Hb_005214_060--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_005214_060--Hb_024990_010 Hb_009913_050--Hb_002942_080 Hb_000318_140 Hb_000318_140 Hb_009913_050--Hb_000318_140 Hb_001396_290 Hb_001396_290 Hb_009913_050--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_009913_050--Hb_002048_090 Hb_025557_020 Hb_025557_020 Hb_009913_050--Hb_025557_020 Hb_007668_040 Hb_007668_040 Hb_002942_080--Hb_007668_040 Hb_003006_060 Hb_003006_060 Hb_002942_080--Hb_003006_060 Hb_002942_080--Hb_002675_060 Hb_002942_080--Hb_024990_010 Hb_001221_040 Hb_001221_040 Hb_002675_060--Hb_001221_040 Hb_002675_060--Hb_000213_070 Hb_000035_040 Hb_000035_040 Hb_002675_060--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_002675_060--Hb_002652_040 Hb_002675_060--Hb_000331_190 Hb_001278_060 Hb_001278_060 Hb_000213_070--Hb_001278_060 Hb_006002_030 Hb_006002_030 Hb_000213_070--Hb_006002_030 Hb_000213_070--Hb_000331_190 Hb_007668_020 Hb_007668_020 Hb_000213_070--Hb_007668_020 Hb_078477_040 Hb_078477_040 Hb_000213_070--Hb_078477_040 Hb_000331_190--Hb_002652_040 Hb_125092_020 Hb_125092_020 Hb_000331_190--Hb_125092_020 Hb_000331_190--Hb_024990_010 Hb_000331_190--Hb_000035_040 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_000531_090 Hb_000531_090 Hb_024990_010--Hb_000531_090 Hb_024990_010--Hb_125092_020 Hb_024990_010--Hb_000340_160 Hb_024990_010--Hb_001221_040 Hb_024990_010--Hb_007668_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.406 12.1958 10.4358 7.18974 28.4315 34.7364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5567 6.77874 4.01214 14.5917 6.87671

CAGE analysis