Hb_005214_090

Information

Type -
Description -
Location Contig5214: 76535-77896
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29250g
description POPTRDRAFT_550077; hypothetical protein
nr
ID XP_012074568.1
description PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KI88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09918 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46788: 76414-78137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_090 0.0 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
2 Hb_000856_310 0.0787800794 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
3 Hb_000244_220 0.0874249871 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
4 Hb_001575_010 0.0955362834 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000627_180 0.0978069881 - - conserved hypothetical protein [Ricinus communis]
6 Hb_156850_070 0.0979323087 - - conserved hypothetical protein [Ricinus communis]
7 Hb_089140_030 0.0992374467 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
8 Hb_000622_250 0.1015302376 - - atpob1, putative [Ricinus communis]
9 Hb_000574_540 0.1032830979 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000594_040 0.1032931236 - - hypothetical protein L484_013922 [Morus notabilis]
11 Hb_002163_010 0.1034060767 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
12 Hb_001912_100 0.1041539123 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
13 Hb_002110_030 0.1042575849 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
14 Hb_004602_040 0.1046885152 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
15 Hb_006831_040 0.1056741887 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
16 Hb_000200_280 0.105838277 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_001621_130 0.1069107865 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
18 Hb_002007_240 0.1073615731 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
19 Hb_003935_030 0.1078094564 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
20 Hb_000327_340 0.1085588011 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]

Gene co-expression network

sample Hb_005214_090 Hb_005214_090 Hb_000856_310 Hb_000856_310 Hb_005214_090--Hb_000856_310 Hb_000244_220 Hb_000244_220 Hb_005214_090--Hb_000244_220 Hb_001575_010 Hb_001575_010 Hb_005214_090--Hb_001575_010 Hb_000627_180 Hb_000627_180 Hb_005214_090--Hb_000627_180 Hb_156850_070 Hb_156850_070 Hb_005214_090--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_005214_090--Hb_089140_030 Hb_000856_310--Hb_000244_220 Hb_004602_040 Hb_004602_040 Hb_000856_310--Hb_004602_040 Hb_000369_130 Hb_000369_130 Hb_000856_310--Hb_000369_130 Hb_017862_020 Hb_017862_020 Hb_000856_310--Hb_017862_020 Hb_000739_100 Hb_000739_100 Hb_000856_310--Hb_000739_100 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_000069_410 Hb_000069_410 Hb_001575_010--Hb_000069_410 Hb_005143_030 Hb_005143_030 Hb_001575_010--Hb_005143_030 Hb_001821_090 Hb_001821_090 Hb_001575_010--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_001575_010--Hb_028487_010 Hb_002170_050 Hb_002170_050 Hb_001575_010--Hb_002170_050 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030 Hb_000622_250 Hb_000622_250 Hb_000627_180--Hb_000622_250 Hb_000236_410 Hb_000236_410 Hb_000627_180--Hb_000236_410 Hb_000627_180--Hb_000069_410 Hb_002636_180 Hb_002636_180 Hb_000627_180--Hb_002636_180 Hb_000925_160 Hb_000925_160 Hb_000627_180--Hb_000925_160 Hb_156850_070--Hb_000622_250 Hb_000740_110 Hb_000740_110 Hb_156850_070--Hb_000740_110 Hb_000976_040 Hb_000976_040 Hb_156850_070--Hb_000976_040 Hb_156850_070--Hb_005143_030 Hb_156850_070--Hb_000627_180 Hb_000200_280 Hb_000200_280 Hb_089140_030--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_089140_030--Hb_011716_090 Hb_089140_030--Hb_000740_110 Hb_089140_030--Hb_001575_010 Hb_089140_030--Hb_000627_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8275 74.7845 15.2585 27.6242 53.8726 61.8523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.1185 24.0979 30.9561 64.2864 18.8886

CAGE analysis