Hb_005214_110

Information

Type -
Description -
Location Contig5214: 97802-99433
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_110 0.0 - - -
2 Hb_007245_090 0.0912599025 - - -
3 Hb_001930_070 0.1195279268 - - -
4 Hb_001158_030 0.1245875786 - - -
5 Hb_000339_070 0.1315569387 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
6 Hb_000014_100 0.1324853136 - - -
7 Hb_001186_060 0.135378231 - - -
8 Hb_006499_010 0.1371921439 - - -
9 Hb_018133_120 0.1396759626 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
10 Hb_004223_230 0.1462204888 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
11 Hb_006189_010 0.1463936709 - - -
12 Hb_000371_110 0.147012016 - - -
13 Hb_031403_010 0.147020653 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
14 Hb_000809_040 0.1501471752 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
15 Hb_002662_100 0.1515260685 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
16 Hb_009026_050 0.1533233442 - - vacuolar ATPase F subunit [Hevea brasiliensis]
17 Hb_015456_020 0.1535701923 - - -
18 Hb_003751_120 0.1539478316 - - -
19 Hb_001220_040 0.1552316473 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
20 Hb_005031_070 0.155706885 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005214_110 Hb_005214_110 Hb_007245_090 Hb_007245_090 Hb_005214_110--Hb_007245_090 Hb_001930_070 Hb_001930_070 Hb_005214_110--Hb_001930_070 Hb_001158_030 Hb_001158_030 Hb_005214_110--Hb_001158_030 Hb_000339_070 Hb_000339_070 Hb_005214_110--Hb_000339_070 Hb_000014_100 Hb_000014_100 Hb_005214_110--Hb_000014_100 Hb_001186_060 Hb_001186_060 Hb_005214_110--Hb_001186_060 Hb_007245_090--Hb_000014_100 Hb_007245_090--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_007245_090--Hb_006499_010 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_007245_090--Hb_000339_070 Hb_001930_070--Hb_006499_010 Hb_001930_070--Hb_001186_060 Hb_000033_050 Hb_000033_050 Hb_001930_070--Hb_000033_050 Hb_001930_070--Hb_000014_100 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_027556_010 Hb_027556_010 Hb_001158_030--Hb_027556_010 Hb_001158_030--Hb_001186_060 Hb_011716_040 Hb_011716_040 Hb_001158_030--Hb_011716_040 Hb_001158_030--Hb_001930_070 Hb_015456_020 Hb_015456_020 Hb_001158_030--Hb_015456_020 Hb_005031_070 Hb_005031_070 Hb_000339_070--Hb_005031_070 Hb_002849_210 Hb_002849_210 Hb_000339_070--Hb_002849_210 Hb_004223_230 Hb_004223_230 Hb_000339_070--Hb_004223_230 Hb_000116_470 Hb_000116_470 Hb_000339_070--Hb_000116_470 Hb_000014_100--Hb_006499_010 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_000014_100--Hb_011716_040 Hb_000014_100--Hb_001158_030 Hb_000371_110 Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_001186_060--Hb_006499_010 Hb_000163_290 Hb_000163_290 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_001186_060--Hb_000033_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5931 6.43328 0.198137 0 25.7241 12.3542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9871 22.258 14.6095 3.36077 0.362635

CAGE analysis