Hb_005214_140

Information

Type -
Description -
Location Contig5214: 112328-115465
Sequence    

Annotation

kegg
ID rcu:RCOM_0817840
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012074569.1
description PREDICTED: transcription factor GTE2-like [Jatropha curcas]
swissprot
ID Q9S7T1
description Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1
trembl
ID A0A067KLR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09920 PE=4 SV=1
Gene Ontology
ID GO:0004402
description global transcription factor group isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46789: 112324-115464 , PASA_asmbl_46790: 112338-115464 , PASA_asmbl_46791: 112338-114389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_140 0.0 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
2 Hb_000270_190 0.0573189908 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
3 Hb_001257_030 0.0605819109 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
4 Hb_004044_050 0.06433335 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
5 Hb_001817_170 0.0651157149 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
6 Hb_001329_250 0.0655524205 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
7 Hb_000103_340 0.0684299974 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
8 Hb_003498_080 0.0692645518 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
9 Hb_073171_070 0.0720239063 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
10 Hb_001863_360 0.0722203165 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
11 Hb_003626_070 0.0753252309 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
12 Hb_000567_230 0.0764415923 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
13 Hb_004324_360 0.0764628102 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
14 Hb_000139_080 0.0765794227 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
15 Hb_001488_020 0.0771152825 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
16 Hb_000773_040 0.077705078 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
17 Hb_003040_050 0.0780608807 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
18 Hb_001377_190 0.0794361284 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
19 Hb_000856_040 0.0800306511 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
20 Hb_001776_020 0.0813740089 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005214_140 Hb_005214_140 Hb_000270_190 Hb_000270_190 Hb_005214_140--Hb_000270_190 Hb_001257_030 Hb_001257_030 Hb_005214_140--Hb_001257_030 Hb_004044_050 Hb_004044_050 Hb_005214_140--Hb_004044_050 Hb_001817_170 Hb_001817_170 Hb_005214_140--Hb_001817_170 Hb_001329_250 Hb_001329_250 Hb_005214_140--Hb_001329_250 Hb_000103_340 Hb_000103_340 Hb_005214_140--Hb_000103_340 Hb_000773_040 Hb_000773_040 Hb_000270_190--Hb_000773_040 Hb_073171_070 Hb_073171_070 Hb_000270_190--Hb_073171_070 Hb_003040_050 Hb_003040_050 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360 Hb_000270_190--Hb_001329_250 Hb_000739_180 Hb_000739_180 Hb_001257_030--Hb_000739_180 Hb_001863_360 Hb_001863_360 Hb_001257_030--Hb_001863_360 Hb_000856_040 Hb_000856_040 Hb_001257_030--Hb_000856_040 Hb_001257_030--Hb_001817_170 Hb_010407_060 Hb_010407_060 Hb_001257_030--Hb_010407_060 Hb_022425_030 Hb_022425_030 Hb_004044_050--Hb_022425_030 Hb_004044_050--Hb_001329_250 Hb_000347_300 Hb_000347_300 Hb_004044_050--Hb_000347_300 Hb_000110_350 Hb_000110_350 Hb_004044_050--Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_004044_050--Hb_170077_010 Hb_003758_010 Hb_003758_010 Hb_001817_170--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_001817_170--Hb_006189_020 Hb_002042_050 Hb_002042_050 Hb_001817_170--Hb_002042_050 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_000139_080 Hb_000139_080 Hb_001817_170--Hb_000139_080 Hb_003498_080 Hb_003498_080 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000635_090 Hb_000635_090 Hb_000103_340--Hb_000635_090 Hb_001018_090 Hb_001018_090 Hb_000103_340--Hb_001018_090 Hb_006275_020 Hb_006275_020 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8547 80.553 80.7315 87.6418 46.0288 39.1581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8861 39.2107 52.3916 54.3356 93.3016

CAGE analysis