Hb_005215_010

Information

Type -
Description -
Location Contig5215: 70017-82456
Sequence    

Annotation

kegg
ID rcu:RCOM_1153850
description heavy metal cation transport atpase, putative (EC:3.6.3.5)
nr
ID XP_012079313.1
description PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
swissprot
ID Q9M3H5
description Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=2 SV=2
trembl
ID A0A067KAF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12459 PE=3 SV=1
Gene Ontology
ID GO:0009941
description probable cadmium zinc-transporting atpase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46802: 70066-82456 , PASA_asmbl_46803: 71532-71766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005215_010 0.0 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
2 Hb_000317_100 0.0271560906 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
3 Hb_002890_130 0.0530052459 - - tip120, putative [Ricinus communis]
4 Hb_011819_020 0.0557661871 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
5 Hb_000494_050 0.059614425 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_003040_050 0.0598627889 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
7 Hb_012760_100 0.061122011 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
8 Hb_000441_090 0.0613346213 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
9 Hb_006839_010 0.061423464 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
10 Hb_012055_110 0.0630400165 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
11 Hb_012518_070 0.0641900988 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
12 Hb_012055_040 0.0651427615 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_000667_030 0.0652132959 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
14 Hb_000003_100 0.0676700911 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
15 Hb_123531_010 0.0703084593 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
16 Hb_000773_040 0.0706647124 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
17 Hb_001341_180 0.071702213 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
18 Hb_002007_110 0.0735598922 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
19 Hb_011174_020 0.0740275639 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
20 Hb_002411_110 0.0741320065 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]

Gene co-expression network

sample Hb_005215_010 Hb_005215_010 Hb_000317_100 Hb_000317_100 Hb_005215_010--Hb_000317_100 Hb_002890_130 Hb_002890_130 Hb_005215_010--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_005215_010--Hb_011819_020 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_003040_050 Hb_003040_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_000317_100--Hb_002890_130 Hb_000317_100--Hb_011819_020 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_002890_130--Hb_011819_020 Hb_002890_130--Hb_002411_110 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_000123_180 Hb_000123_180 Hb_000494_050--Hb_000123_180 Hb_012055_040 Hb_012055_040 Hb_000494_050--Hb_012055_040 Hb_000494_050--Hb_011819_020 Hb_000494_050--Hb_000317_100 Hb_012518_070 Hb_012518_070 Hb_000494_050--Hb_012518_070 Hb_009288_020 Hb_009288_020 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_003734_010 Hb_003734_010 Hb_012760_100--Hb_003734_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56237 5.31902 3.81425 5.16846 4.73724 4.37597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40816 2.49408 3.20046 4.97229 6.43516

CAGE analysis