Hb_005215_060

Information

Type -
Description -
Location Contig5215: 130511-132605
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18580g
description POPTRDRAFT_208732; hypothetical protein
nr
ID XP_012079308.1
description PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
swissprot
ID Q9FGQ6
description Microtubule-associated protein RP/EB family member 1C OS=Arabidopsis thaliana GN=EB1C PE=1 SV=1
trembl
ID A0A067KJI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12455 PE=4 SV=1
Gene Ontology
ID GO:0009987
description microtubule-associated protein rp eb family member 1c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46808: 126814-129617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005215_060 0.0 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
2 Hb_020805_040 0.1723104162 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
3 Hb_008026_010 0.1911071409 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Jatropha curcas]
4 Hb_000093_090 0.2245963216 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
5 Hb_002681_120 0.2267426325 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
6 Hb_003540_120 0.2281457028 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000077_110 0.2304132713 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
8 Hb_118283_010 0.2310598803 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001823_090 0.2320946382 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005618_130 0.2326356176 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_030685_010 0.2347912647 - - -
12 Hb_000581_030 0.2349661119 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000103_330 0.2357984864 - - PREDICTED: meiotic recombination protein DMC1 homolog isoform X1 [Glycine max]
14 Hb_000237_020 0.2410267661 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
15 Hb_135121_010 0.2422667498 - - PREDICTED: uncharacterized protein LOC105635544 [Jatropha curcas]
16 Hb_129996_010 0.243842757 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
17 Hb_002030_130 0.2439177934 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_074419_010 0.2442068216 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
19 Hb_000083_150 0.2447428959 - - PREDICTED: uncharacterized protein LOC105631732 [Jatropha curcas]
20 Hb_000483_080 0.2448483229 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]

Gene co-expression network

sample Hb_005215_060 Hb_005215_060 Hb_020805_040 Hb_020805_040 Hb_005215_060--Hb_020805_040 Hb_008026_010 Hb_008026_010 Hb_005215_060--Hb_008026_010 Hb_000093_090 Hb_000093_090 Hb_005215_060--Hb_000093_090 Hb_002681_120 Hb_002681_120 Hb_005215_060--Hb_002681_120 Hb_003540_120 Hb_003540_120 Hb_005215_060--Hb_003540_120 Hb_000077_110 Hb_000077_110 Hb_005215_060--Hb_000077_110 Hb_118283_010 Hb_118283_010 Hb_020805_040--Hb_118283_010 Hb_000963_050 Hb_000963_050 Hb_020805_040--Hb_000963_050 Hb_020805_040--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_020805_040--Hb_030685_010 Hb_001823_090 Hb_001823_090 Hb_020805_040--Hb_001823_090 Hb_000320_310 Hb_000320_310 Hb_020805_040--Hb_000320_310 Hb_074419_010 Hb_074419_010 Hb_008026_010--Hb_074419_010 Hb_005618_130 Hb_005618_130 Hb_008026_010--Hb_005618_130 Hb_008026_010--Hb_030685_010 Hb_000363_260 Hb_000363_260 Hb_008026_010--Hb_000363_260 Hb_008026_010--Hb_002681_120 Hb_002292_080 Hb_002292_080 Hb_000093_090--Hb_002292_080 Hb_000162_190 Hb_000162_190 Hb_000093_090--Hb_000162_190 Hb_000853_250 Hb_000853_250 Hb_000093_090--Hb_000853_250 Hb_003935_040 Hb_003935_040 Hb_000093_090--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000093_090--Hb_001141_440 Hb_000093_090--Hb_030685_010 Hb_002681_120--Hb_003540_120 Hb_002681_120--Hb_000363_260 Hb_019654_060 Hb_019654_060 Hb_002681_120--Hb_019654_060 Hb_001119_070 Hb_001119_070 Hb_002681_120--Hb_001119_070 Hb_000581_030 Hb_000581_030 Hb_002681_120--Hb_000581_030 Hb_003929_190 Hb_003929_190 Hb_002681_120--Hb_003929_190 Hb_003540_120--Hb_030685_010 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_001188_050 Hb_001188_050 Hb_003540_120--Hb_001188_050 Hb_003540_120--Hb_001823_090 Hb_000483_080 Hb_000483_080 Hb_000077_110--Hb_000483_080 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000566_130 Hb_000566_130 Hb_000077_110--Hb_000566_130 Hb_093458_020 Hb_093458_020 Hb_000077_110--Hb_093458_020 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050 Hb_002284_260 Hb_002284_260 Hb_000077_110--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0975799 0 1.04113 1.62037 0.0917111 0.261601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0893061 0 0.588974 0.341052

CAGE analysis