Hb_005215_080

Information

Type -
Description -
Location Contig5215: 158770-160573
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18550g
description POPTRDRAFT_558898; cyclin D3-2 family protein
nr
ID XP_012079305.1
description PREDICTED: cyclin-D3-3 [Jatropha curcas]
swissprot
ID Q9FGQ7
description Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=2 SV=1
trembl
ID A0A067K799
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12453 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin d3-2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46810: 158970-160224 , PASA_asmbl_46811: 160251-160503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005215_080 0.0 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
2 Hb_002014_080 0.0838471984 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
3 Hb_000462_150 0.094925077 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
4 Hb_009118_010 0.099311255 - - methionine aminopeptidase, putative [Ricinus communis]
5 Hb_123475_010 0.1003181932 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
6 Hb_000370_030 0.1026571946 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
7 Hb_010866_040 0.10273039 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
8 Hb_000230_330 0.1036321509 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
9 Hb_003581_140 0.103684741 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
10 Hb_011282_030 0.1054239666 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
11 Hb_028639_060 0.1063764813 - - transporter, putative [Ricinus communis]
12 Hb_000120_800 0.1068123447 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
13 Hb_001840_080 0.1068972903 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
14 Hb_000012_090 0.107095755 - - 3'-5' exonuclease, putative [Ricinus communis]
15 Hb_001295_020 0.1074684619 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
16 Hb_000671_100 0.1076059598 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
17 Hb_003352_050 0.1097224195 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
18 Hb_000120_500 0.1100329442 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
19 Hb_000077_050 0.1108832349 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_003434_060 0.1113829906 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005215_080 Hb_005215_080 Hb_002014_080 Hb_002014_080 Hb_005215_080--Hb_002014_080 Hb_000462_150 Hb_000462_150 Hb_005215_080--Hb_000462_150 Hb_009118_010 Hb_009118_010 Hb_005215_080--Hb_009118_010 Hb_123475_010 Hb_123475_010 Hb_005215_080--Hb_123475_010 Hb_000370_030 Hb_000370_030 Hb_005215_080--Hb_000370_030 Hb_010866_040 Hb_010866_040 Hb_005215_080--Hb_010866_040 Hb_024714_030 Hb_024714_030 Hb_002014_080--Hb_024714_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_014568_030 Hb_014568_030 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_000671_100 Hb_000671_100 Hb_002014_080--Hb_000671_100 Hb_002215_050 Hb_002215_050 Hb_002014_080--Hb_002215_050 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_003602_040 Hb_003602_040 Hb_009118_010--Hb_003602_040 Hb_004608_020 Hb_004608_020 Hb_009118_010--Hb_004608_020 Hb_009118_010--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030 Hb_061908_010 Hb_061908_010 Hb_123475_010--Hb_061908_010 Hb_000169_010 Hb_000169_010 Hb_123475_010--Hb_000169_010 Hb_001124_210 Hb_001124_210 Hb_123475_010--Hb_001124_210 Hb_185830_020 Hb_185830_020 Hb_123475_010--Hb_185830_020 Hb_004223_090 Hb_004223_090 Hb_123475_010--Hb_004223_090 Hb_123475_010--Hb_000956_030 Hb_000184_130 Hb_000184_130 Hb_000370_030--Hb_000184_130 Hb_000300_280 Hb_000300_280 Hb_000370_030--Hb_000300_280 Hb_000457_060 Hb_000457_060 Hb_000370_030--Hb_000457_060 Hb_004310_060 Hb_004310_060 Hb_000370_030--Hb_004310_060 Hb_000568_040 Hb_000568_040 Hb_000370_030--Hb_000568_040 Hb_000316_030 Hb_000316_030 Hb_000370_030--Hb_000316_030 Hb_002169_010 Hb_002169_010 Hb_010866_040--Hb_002169_010 Hb_010866_040--Hb_004310_060 Hb_010866_040--Hb_000462_150 Hb_010866_040--Hb_000457_060 Hb_018663_020 Hb_018663_020 Hb_010866_040--Hb_018663_020 Hb_010866_040--Hb_000370_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.5479 7.9738 6.04013 11.9906 34.3336 53.0181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9009 17.4891 26.1639 19.1694 2.22454

CAGE analysis