Hb_005224_010

Information

Type -
Description -
Location Contig5224: 27987-29372
Sequence    

Annotation

kegg
ID rcu:RCOM_0530530
description glycine-rich RNA-binding protein, putative
nr
ID BAG15857.1
description glycine-rich protein [Bruguiera gymnorhiza]
swissprot
ID P49310
description Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
trembl
ID B1Q4T1
description Glycine-rich protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46853: 28298-29384 , PASA_asmbl_46854: 28298-29384 , PASA_asmbl_46855: 28298-29384
cDNA
(Sanger)
(ID:Location)		 002_P19.ab1: 28296-29229 , 006_H21.ab1: 28298-29255 , 010_D03.ab1: 28302-29071 , 012_F16.ab1: 28298-29237 , 014_A07.ab1: 28298-29253 , 020_J09.ab1: 28298-29252 , 021_C03.ab1: 29043-29271 , 021_F21.ab1: 28298-29252 , 023_A09.ab1: 28298-29149 , 023_E23.ab1: 28298-29117 , 023_L08.ab1: 28298-29245 , 025_N16.ab1: 28298-29252 , 027_O05.ab1: 28298-29253 , 028_J19.ab1: 28298-29233 , 029_F02.ab1: 29043-29271 , 030_B14.ab1: 28298-29253 , 030_D05.ab1: 28298-29259 , 031_J16.ab1: 28298-28919 , 032_N24.ab1: 28298-29247 , 037_M23.ab1: 28298-29255 , 043_C14.ab1: 28298-29233 , 043_N17.ab1: 28298-29254 , 047_N07.ab1: 28298-29252 , 053_G10.ab1: 28298-29259 , 053_M08.ab1: 28298-29242

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005224_010 0.0 - - glycine-rich protein [Bruguiera gymnorhiza]
2 Hb_000327_220 0.1158638613 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
3 Hb_002239_060 0.1190776891 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_001159_080 0.1271962848 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
5 Hb_005489_100 0.1334255292 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003972_080 0.1356201263 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
7 Hb_009314_010 0.1393870849 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_000599_350 0.1445634184 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
9 Hb_003994_190 0.1467237267 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012291_030 0.1484301901 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
11 Hb_002078_440 0.148571764 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
12 Hb_093458_050 0.1503950225 - - glutathione reductase [Hevea brasiliensis]
13 Hb_011030_020 0.1505618996 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
14 Hb_002756_020 0.1509479497 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
15 Hb_002600_040 0.152109283 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
16 Hb_002205_130 0.1525351714 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
17 Hb_024468_020 0.1543872447 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_000016_190 0.1568623048 - - ABC transporter B family member 28 [Glycine soja]
19 Hb_001481_140 0.1583516207 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
20 Hb_000922_390 0.1596800146 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]

Gene co-expression network

sample Hb_005224_010 Hb_005224_010 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_002756_020 Hb_002756_020 Hb_000327_220--Hb_002756_020 Hb_011030_020 Hb_011030_020 Hb_000327_220--Hb_011030_020 Hb_000327_220--Hb_001159_080 Hb_003551_050 Hb_003551_050 Hb_000327_220--Hb_003551_050 Hb_000789_220 Hb_000789_220 Hb_000327_220--Hb_000789_220 Hb_001481_140 Hb_001481_140 Hb_002239_060--Hb_001481_140 Hb_002742_090 Hb_002742_090 Hb_002239_060--Hb_002742_090 Hb_093458_050 Hb_093458_050 Hb_002239_060--Hb_093458_050 Hb_003581_260 Hb_003581_260 Hb_002239_060--Hb_003581_260 Hb_001008_090 Hb_001008_090 Hb_002239_060--Hb_001008_090 Hb_000530_070 Hb_000530_070 Hb_002239_060--Hb_000530_070 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_001159_080--Hb_003581_260 Hb_000141_020 Hb_000141_020 Hb_001159_080--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130 Hb_003994_190 Hb_003994_190 Hb_005489_100--Hb_003994_190 Hb_005489_100--Hb_000327_220 Hb_005489_100--Hb_001159_080 Hb_005489_100--Hb_002239_060 Hb_000130_110 Hb_000130_110 Hb_005489_100--Hb_000130_110 Hb_003462_120 Hb_003462_120 Hb_003972_080--Hb_003462_120 Hb_003972_080--Hb_001481_140 Hb_003783_030 Hb_003783_030 Hb_003972_080--Hb_003783_030 Hb_000007_140 Hb_000007_140 Hb_003972_080--Hb_000007_140 Hb_036790_020 Hb_036790_020 Hb_003972_080--Hb_036790_020 Hb_000161_150 Hb_000161_150 Hb_009314_010--Hb_000161_150 Hb_000432_050 Hb_000432_050 Hb_009314_010--Hb_000432_050 Hb_006816_450 Hb_006816_450 Hb_009314_010--Hb_006816_450 Hb_009314_010--Hb_002756_020 Hb_000771_130 Hb_000771_130 Hb_009314_010--Hb_000771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
284.921 227.401 156.214 263.851 155.724 149.964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
537.516 849.624 1699.79 715.024 183.775

CAGE analysis