Hb_005224_030

Information

Type -
Description -
Location Contig5224: 62835-72143
Sequence    

Annotation

kegg
ID tcc:TCM_001694
description Dipeptide transport ATP-binding protein dppF
nr
ID XP_007048675.1
description Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
swissprot
ID O04244
description Uncharacterized protein At4g02000 OS=Arabidopsis thaliana GN=At4g02000 PE=2 SV=1
trembl
ID A0A061DKA0
description Dipeptide transport ATP-binding protein dppF OS=Theobroma cacao GN=TCM_001694 PE=4 SV=1
Gene Ontology
ID GO:0005524
description dipeptide transport atp-binding protein dppf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005224_030 0.0 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
2 Hb_003086_060 0.1607243281 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
3 Hb_002759_240 0.1658341712 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
4 Hb_001159_200 0.1724253472 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
5 Hb_029510_040 0.192595641 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
6 Hb_000723_190 0.1942501944 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
7 Hb_001863_420 0.1960884998 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
8 Hb_000111_010 0.1977164189 - - DNA-directed RNA polymerase, putative [Ricinus communis]
9 Hb_001894_170 0.1977508708 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
10 Hb_000103_550 0.1989674225 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
11 Hb_005539_240 0.1991440462 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
12 Hb_000432_050 0.2015394977 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
13 Hb_002876_370 0.2021091543 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
14 Hb_034585_050 0.2025466103 - - -
15 Hb_001369_400 0.2052912906 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
16 Hb_000454_070 0.2059463861 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
17 Hb_002918_140 0.2088803342 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
18 Hb_062135_020 0.2090079445 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
19 Hb_005839_110 0.2096459528 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
20 Hb_000771_130 0.2099794135 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005224_030 Hb_005224_030 Hb_003086_060 Hb_003086_060 Hb_005224_030--Hb_003086_060 Hb_002759_240 Hb_002759_240 Hb_005224_030--Hb_002759_240 Hb_001159_200 Hb_001159_200 Hb_005224_030--Hb_001159_200 Hb_029510_040 Hb_029510_040 Hb_005224_030--Hb_029510_040 Hb_000723_190 Hb_000723_190 Hb_005224_030--Hb_000723_190 Hb_001863_420 Hb_001863_420 Hb_005224_030--Hb_001863_420 Hb_002518_290 Hb_002518_290 Hb_003086_060--Hb_002518_290 Hb_062135_020 Hb_062135_020 Hb_003086_060--Hb_062135_020 Hb_003185_050 Hb_003185_050 Hb_003086_060--Hb_003185_050 Hb_000236_150 Hb_000236_150 Hb_003086_060--Hb_000236_150 Hb_003086_060--Hb_001159_200 Hb_002918_140 Hb_002918_140 Hb_003086_060--Hb_002918_140 Hb_001894_170 Hb_001894_170 Hb_002759_240--Hb_001894_170 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_000264_020 Hb_000264_020 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_001369_400 Hb_001369_400 Hb_001159_200--Hb_001369_400 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_000318_490 Hb_000318_490 Hb_001159_200--Hb_000318_490 Hb_001159_200--Hb_001863_420 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_002756_020 Hb_002756_020 Hb_029510_040--Hb_002756_020 Hb_001357_010 Hb_001357_010 Hb_029510_040--Hb_001357_010 Hb_001189_050 Hb_001189_050 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_029510_040--Hb_000723_190 Hb_000723_190--Hb_001894_170 Hb_000723_190--Hb_002759_240 Hb_002182_090 Hb_002182_090 Hb_000723_190--Hb_002182_090 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000252_130 Hb_000252_130 Hb_000723_190--Hb_000252_130 Hb_000723_190--Hb_000432_050 Hb_001863_420--Hb_002918_140 Hb_001386_050 Hb_001386_050 Hb_001863_420--Hb_001386_050 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001863_420--Hb_001369_400 Hb_001863_420--Hb_003086_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03249 0.187078 0 0 1.06116 1.01066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73125 9.55356 7.7711 2.43543 1.4993

CAGE analysis