Hb_005224_050

Information

Type -
Description -
Location Contig5224: 79839-80191
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05810g
description POPTRDRAFT_643359; hypothetical protein
nr
ID XP_012070105.1
description PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10098 PE=4 SV=1
Gene Ontology
ID GO:0005524
description dipeptide transport atp-binding protein dppf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46856: 79639-82068
cDNA
(Sanger)
(ID:Location)		 005_G03.ab1: 79670-82059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005224_050 0.0 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
2 Hb_017711_010 0.0688506741 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
3 Hb_003058_220 0.080274534 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
4 Hb_000193_350 0.0875896092 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
5 Hb_000199_070 0.0949849452 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003687_020 0.0994925024 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
7 Hb_002293_030 0.108282344 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
8 Hb_008847_020 0.1162064745 - - 40S ribosomal protein S17C [Hevea brasiliensis]
9 Hb_000175_400 0.1168110047 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001610_130 0.1201824002 - - 40S ribosomal protein S30 [Medicago truncatula]
11 Hb_001053_160 0.120625915 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
12 Hb_004807_060 0.1211874766 - - -
13 Hb_002701_050 0.123279773 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
14 Hb_025193_050 0.1238912819 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
15 Hb_001247_350 0.1262343571 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
16 Hb_004007_100 0.1278179378 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
17 Hb_000189_530 0.1294866031 - - 40S ribosomal protein S24B [Hevea brasiliensis]
18 Hb_005496_030 0.1300281329 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
19 Hb_000684_230 0.1309881484 - - 40S ribosomal protein S23, putative [Ricinus communis]
20 Hb_000184_050 0.1320000525 - - NOI, putative [Ricinus communis]

Gene co-expression network

sample Hb_005224_050 Hb_005224_050 Hb_017711_010 Hb_017711_010 Hb_005224_050--Hb_017711_010 Hb_003058_220 Hb_003058_220 Hb_005224_050--Hb_003058_220 Hb_000193_350 Hb_000193_350 Hb_005224_050--Hb_000193_350 Hb_000199_070 Hb_000199_070 Hb_005224_050--Hb_000199_070 Hb_003687_020 Hb_003687_020 Hb_005224_050--Hb_003687_020 Hb_002293_030 Hb_002293_030 Hb_005224_050--Hb_002293_030 Hb_017711_010--Hb_002293_030 Hb_017711_010--Hb_000193_350 Hb_000175_400 Hb_000175_400 Hb_017711_010--Hb_000175_400 Hb_017711_010--Hb_003058_220 Hb_000009_040 Hb_000009_040 Hb_017711_010--Hb_000009_040 Hb_003058_220--Hb_000199_070 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_000193_350--Hb_000175_400 Hb_000193_350--Hb_003687_020 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_025193_050 Hb_025193_050 Hb_003687_020--Hb_025193_050 Hb_007317_060 Hb_007317_060 Hb_003687_020--Hb_007317_060 Hb_002259_150 Hb_002259_150 Hb_003687_020--Hb_002259_150 Hb_000684_230 Hb_000684_230 Hb_003687_020--Hb_000684_230 Hb_011310_060 Hb_011310_060 Hb_002293_030--Hb_011310_060 Hb_002293_030--Hb_008847_020 Hb_002234_210 Hb_002234_210 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002293_030--Hb_000634_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.8171 17.4213 18.1016 62.0737 90.9801 254.302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
172.847 374.349 94.3366 51.762 7.549

CAGE analysis