Hb_005227_050

Information

Type -
Description -
Location Contig5227: 56684-57142
Sequence    

Annotation

kegg
ID rcu:RCOM_0702500
description hypothetical protein
nr
ID XP_002523552.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SC33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0702500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005227_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003952_080 0.1577370415 - - zinc finger protein, putative [Ricinus communis]
3 Hb_003226_130 0.1612082317 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
4 Hb_004157_060 0.1777336861 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
5 Hb_000313_280 0.1857466928 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
6 Hb_001810_040 0.1857742266 - - -
7 Hb_003906_150 0.1895309403 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
8 Hb_006187_020 0.1972597481 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
9 Hb_000007_470 0.1987703558 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
10 Hb_000566_090 0.2031938011 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000429_080 0.2035856844 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004241_200 0.2047425555 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
13 Hb_027402_110 0.2065004076 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
14 Hb_156850_040 0.2075825332 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
15 Hb_001766_140 0.207836709 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
16 Hb_001255_030 0.2082093778 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
17 Hb_116091_010 0.2083287294 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
18 Hb_002874_160 0.2085552623 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002894_070 0.2093065478 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
20 Hb_001318_180 0.2107558401 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005227_050 Hb_005227_050 Hb_003952_080 Hb_003952_080 Hb_005227_050--Hb_003952_080 Hb_003226_130 Hb_003226_130 Hb_005227_050--Hb_003226_130 Hb_004157_060 Hb_004157_060 Hb_005227_050--Hb_004157_060 Hb_000313_280 Hb_000313_280 Hb_005227_050--Hb_000313_280 Hb_001810_040 Hb_001810_040 Hb_005227_050--Hb_001810_040 Hb_003906_150 Hb_003906_150 Hb_005227_050--Hb_003906_150 Hb_000733_090 Hb_000733_090 Hb_003952_080--Hb_000733_090 Hb_000007_470 Hb_000007_470 Hb_003952_080--Hb_000007_470 Hb_049915_010 Hb_049915_010 Hb_003952_080--Hb_049915_010 Hb_108216_030 Hb_108216_030 Hb_003952_080--Hb_108216_030 Hb_023768_010 Hb_023768_010 Hb_003952_080--Hb_023768_010 Hb_007382_130 Hb_007382_130 Hb_003226_130--Hb_007382_130 Hb_003226_130--Hb_000313_280 Hb_003226_130--Hb_001810_040 Hb_123301_010 Hb_123301_010 Hb_003226_130--Hb_123301_010 Hb_001097_080 Hb_001097_080 Hb_003226_130--Hb_001097_080 Hb_001675_260 Hb_001675_260 Hb_004157_060--Hb_001675_260 Hb_027402_110 Hb_027402_110 Hb_004157_060--Hb_027402_110 Hb_001766_140 Hb_001766_140 Hb_004157_060--Hb_001766_140 Hb_000021_010 Hb_000021_010 Hb_004157_060--Hb_000021_010 Hb_001318_180 Hb_001318_180 Hb_004157_060--Hb_001318_180 Hb_006187_020 Hb_006187_020 Hb_004157_060--Hb_006187_020 Hb_002894_070 Hb_002894_070 Hb_000313_280--Hb_002894_070 Hb_002122_060 Hb_002122_060 Hb_000313_280--Hb_002122_060 Hb_000015_140 Hb_000015_140 Hb_000313_280--Hb_000015_140 Hb_000616_100 Hb_000616_100 Hb_000313_280--Hb_000616_100 Hb_000450_170 Hb_000450_170 Hb_000313_280--Hb_000450_170 Hb_001810_040--Hb_023768_010 Hb_002320_050 Hb_002320_050 Hb_001810_040--Hb_002320_050 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_004308_020 Hb_004308_020 Hb_001810_040--Hb_004308_020 Hb_002277_020 Hb_002277_020 Hb_001810_040--Hb_002277_020 Hb_000429_080 Hb_000429_080 Hb_001810_040--Hb_000429_080 Hb_000604_050 Hb_000604_050 Hb_003906_150--Hb_000604_050 Hb_003906_150--Hb_001318_180 Hb_008566_070 Hb_008566_070 Hb_003906_150--Hb_008566_070 Hb_111985_090 Hb_111985_090 Hb_003906_150--Hb_111985_090 Hb_004007_190 Hb_004007_190 Hb_003906_150--Hb_004007_190 Hb_000983_110 Hb_000983_110 Hb_003906_150--Hb_000983_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348642 144.244 35.2928 456.009 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.30349 33.2508 14.1712 11.0878 15.8359

CAGE analysis