Hb_005227_070

Information

Type -
Description -
Location Contig5227: 88148-97662
Sequence    

Annotation

kegg
ID rcu:RCOM_0702510
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002523553.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID B9SC34
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0702510 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase superfamily protein with octicosapeptide phox bem1p isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46868: 88257-93099 , PASA_asmbl_46869: 89608-89752 , PASA_asmbl_46871: 90740-90929 , PASA_asmbl_46873: 93107-97349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005227_070 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_034083_010 0.0797069992 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012055_020 0.0934423024 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
4 Hb_000291_280 0.1102120437 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
5 Hb_002997_100 0.1169933147 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
6 Hb_098993_010 0.1188706618 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
7 Hb_000088_040 0.1222712847 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
8 Hb_000427_030 0.1229360708 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011174_070 0.123678592 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
10 Hb_000984_180 0.1239349064 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
11 Hb_000078_130 0.1273167537 - - -
12 Hb_003209_020 0.1279168552 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
13 Hb_000230_110 0.1279245741 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
14 Hb_026048_100 0.1285089496 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
15 Hb_073171_110 0.1287362337 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
16 Hb_002422_060 0.1292981859 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_006091_030 0.130031239 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
18 Hb_003404_030 0.130192714 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_012340_010 0.1303779773 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
20 Hb_001040_170 0.132976059 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005227_070 Hb_005227_070 Hb_034083_010 Hb_034083_010 Hb_005227_070--Hb_034083_010 Hb_012055_020 Hb_012055_020 Hb_005227_070--Hb_012055_020 Hb_000291_280 Hb_000291_280 Hb_005227_070--Hb_000291_280 Hb_002997_100 Hb_002997_100 Hb_005227_070--Hb_002997_100 Hb_098993_010 Hb_098993_010 Hb_005227_070--Hb_098993_010 Hb_000088_040 Hb_000088_040 Hb_005227_070--Hb_000088_040 Hb_034083_010--Hb_012055_020 Hb_032531_030 Hb_032531_030 Hb_034083_010--Hb_032531_030 Hb_000984_180 Hb_000984_180 Hb_034083_010--Hb_000984_180 Hb_001040_170 Hb_001040_170 Hb_034083_010--Hb_001040_170 Hb_000230_110 Hb_000230_110 Hb_034083_010--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_012055_020--Hb_176022_020 Hb_012055_020--Hb_000984_180 Hb_012055_020--Hb_000230_110 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_000427_030 Hb_000427_030 Hb_000291_280--Hb_000427_030 Hb_000291_280--Hb_098993_010 Hb_000291_280--Hb_000088_040 Hb_022148_010 Hb_022148_010 Hb_000291_280--Hb_022148_010 Hb_127003_010 Hb_127003_010 Hb_000291_280--Hb_127003_010 Hb_022256_040 Hb_022256_040 Hb_002997_100--Hb_022256_040 Hb_182026_010 Hb_182026_010 Hb_002997_100--Hb_182026_010 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_000230_330 Hb_000230_330 Hb_002997_100--Hb_000230_330 Hb_000733_060 Hb_000733_060 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010 Hb_003297_030 Hb_003297_030 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_000025_480 Hb_000025_480 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_007558_140 Hb_007558_140 Hb_098993_010--Hb_007558_140 Hb_000088_040--Hb_176022_020 Hb_000088_040--Hb_000230_110 Hb_003404_030 Hb_003404_030 Hb_000088_040--Hb_003404_030 Hb_000088_040--Hb_012055_020 Hb_000088_040--Hb_098993_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.8564 11.2149 7.98816 13.0905 126.399 105.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.6494 37.3123 106.64 17.8108 9.67298

CAGE analysis