Hb_005228_040

Information

Type -
Description -
Location Contig5228: 45726-49740
Sequence    

Annotation

kegg
ID rcu:RCOM_0290330
description Transcription factor RF2a, putative
nr
ID XP_012071280.1
description PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
swissprot
ID Q8W3M7
description Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2
trembl
ID A0A067KV23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04965 PE=4 SV=1
Gene Ontology
ID GO:0003700
description basic-leucine zipper transcription factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46875: 45404-60743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_040 0.0 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
2 Hb_009252_010 0.1013067166 - - PREDICTED: kinesin light chain [Jatropha curcas]
3 Hb_001628_120 0.1033893358 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
4 Hb_183963_010 0.1071002127 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
5 Hb_000984_210 0.1100889678 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
6 Hb_003226_250 0.1231225889 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
7 Hb_000834_080 0.126986791 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
8 Hb_011310_040 0.1286619884 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
9 Hb_004306_110 0.1371633665 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
10 Hb_121089_040 0.1373618753 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
11 Hb_000684_390 0.138693158 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
12 Hb_002164_020 0.1388450052 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000062_400 0.1412336988 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001369_100 0.1415491421 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
15 Hb_009079_050 0.1422578877 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
16 Hb_007576_060 0.1430616494 - - -
17 Hb_011053_030 0.1442025161 - - -
18 Hb_000866_050 0.1442176257 - - phosphate transporter [Manihot esculenta]
19 Hb_000107_590 0.1446181691 - - PREDICTED: tricalbin-3 [Jatropha curcas]
20 Hb_000139_300 0.1446943171 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]

Gene co-expression network

sample Hb_005228_040 Hb_005228_040 Hb_009252_010 Hb_009252_010 Hb_005228_040--Hb_009252_010 Hb_001628_120 Hb_001628_120 Hb_005228_040--Hb_001628_120 Hb_183963_010 Hb_183963_010 Hb_005228_040--Hb_183963_010 Hb_000984_210 Hb_000984_210 Hb_005228_040--Hb_000984_210 Hb_003226_250 Hb_003226_250 Hb_005228_040--Hb_003226_250 Hb_000834_080 Hb_000834_080 Hb_005228_040--Hb_000834_080 Hb_030959_010 Hb_030959_010 Hb_009252_010--Hb_030959_010 Hb_009674_050 Hb_009674_050 Hb_009252_010--Hb_009674_050 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_005348_110 Hb_005348_110 Hb_009252_010--Hb_005348_110 Hb_001976_030 Hb_001976_030 Hb_001628_120--Hb_001976_030 Hb_001628_120--Hb_000684_390 Hb_042083_040 Hb_042083_040 Hb_001628_120--Hb_042083_040 Hb_000049_180 Hb_000049_180 Hb_001628_120--Hb_000049_180 Hb_007441_310 Hb_007441_310 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_011053_020 Hb_011053_020 Hb_183963_010--Hb_011053_020 Hb_000866_050 Hb_000866_050 Hb_183963_010--Hb_000866_050 Hb_026314_030 Hb_026314_030 Hb_183963_010--Hb_026314_030 Hb_011053_030 Hb_011053_030 Hb_183963_010--Hb_011053_030 Hb_000023_210 Hb_000023_210 Hb_183963_010--Hb_000023_210 Hb_002305_010 Hb_002305_010 Hb_000984_210--Hb_002305_010 Hb_000984_210--Hb_003226_250 Hb_003728_090 Hb_003728_090 Hb_000984_210--Hb_003728_090 Hb_000984_210--Hb_183963_010 Hb_011310_040 Hb_011310_040 Hb_000984_210--Hb_011310_040 Hb_001369_010 Hb_001369_010 Hb_003226_250--Hb_001369_010 Hb_000808_150 Hb_000808_150 Hb_003226_250--Hb_000808_150 Hb_003226_250--Hb_011310_040 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_003462_040 Hb_003462_040 Hb_003226_250--Hb_003462_040 Hb_000834_080--Hb_011053_030 Hb_126917_010 Hb_126917_010 Hb_000834_080--Hb_126917_010 Hb_000834_080--Hb_001628_120 Hb_012799_190 Hb_012799_190 Hb_000834_080--Hb_012799_190 Hb_000975_050 Hb_000975_050 Hb_000834_080--Hb_000975_050 Hb_000175_050 Hb_000175_050 Hb_000834_080--Hb_000175_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.892977 1.98715 5.92984 13.8257 1.50367 2.21315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04392 3.21528 4.25563 2.37646 19.3777

CAGE analysis