Hb_005228_050

Information

Type -
Description -
Location Contig5228: 49924-50247
Sequence    

Annotation

kegg
ID bvg:104896168
description uncharacterized LOC104896168
nr
ID XP_010681189.1
description PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID Q6L4B3
description Polyprotein, putative OS=Solanum demissum GN=SDM1_19t00015 PE=4 SV=2
Gene Ontology
ID GO:0005488
description dna-directed rna polymerase i subunit rpa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46875: 45404-60743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_050 0.0 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
2 Hb_000724_040 0.0072935122 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
3 Hb_003786_030 0.0310831859 - - BnaUnng00830D [Brassica napus]
4 Hb_002973_060 0.0324079494 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011108_010 0.0338269344 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
6 Hb_135887_010 0.0442279441 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
7 Hb_000540_080 0.0515688446 - - PREDICTED: laccase-17 [Jatropha curcas]
8 Hb_000115_030 0.0541951253 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
9 Hb_099263_010 0.0611448327 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
10 Hb_005991_030 0.0632168184 - - copper ion binding protein, putative [Ricinus communis]
11 Hb_104014_020 0.0678573313 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
12 Hb_045260_010 0.0686339937 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
13 Hb_000023_100 0.0694688374 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
14 Hb_000077_040 0.0728666688 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
15 Hb_096907_010 0.0756896645 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
16 Hb_000160_120 0.0796878955 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000363_070 0.0813981404 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011362_010 0.0817101024 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
19 Hb_001437_170 0.0825371077 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
20 Hb_003025_170 0.08523103 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]

Gene co-expression network

sample Hb_005228_050 Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_005228_050--Hb_000724_040 Hb_003786_030 Hb_003786_030 Hb_005228_050--Hb_003786_030 Hb_002973_060 Hb_002973_060 Hb_005228_050--Hb_002973_060 Hb_011108_010 Hb_011108_010 Hb_005228_050--Hb_011108_010 Hb_135887_010 Hb_135887_010 Hb_005228_050--Hb_135887_010 Hb_000540_080 Hb_000540_080 Hb_005228_050--Hb_000540_080 Hb_000724_040--Hb_002973_060 Hb_000724_040--Hb_003786_030 Hb_000724_040--Hb_011108_010 Hb_000724_040--Hb_135887_010 Hb_000115_030 Hb_000115_030 Hb_000724_040--Hb_000115_030 Hb_003786_030--Hb_002973_060 Hb_003786_030--Hb_135887_010 Hb_003786_030--Hb_011108_010 Hb_104014_020 Hb_104014_020 Hb_003786_030--Hb_104014_020 Hb_002973_060--Hb_000115_030 Hb_002973_060--Hb_104014_020 Hb_000077_040 Hb_000077_040 Hb_002973_060--Hb_000077_040 Hb_011108_010--Hb_135887_010 Hb_005991_030 Hb_005991_030 Hb_011108_010--Hb_005991_030 Hb_099263_010 Hb_099263_010 Hb_011108_010--Hb_099263_010 Hb_135887_010--Hb_005991_030 Hb_000580_200 Hb_000580_200 Hb_135887_010--Hb_000580_200 Hb_045260_010 Hb_045260_010 Hb_000540_080--Hb_045260_010 Hb_000363_070 Hb_000363_070 Hb_000540_080--Hb_000363_070 Hb_000540_080--Hb_000724_040 Hb_011362_010 Hb_011362_010 Hb_000540_080--Hb_011362_010 Hb_000160_120 Hb_000160_120 Hb_000540_080--Hb_000160_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.212562 0.781913 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.57365

CAGE analysis