Hb_005228_060

Information

Type -
Description -
Location Contig5228: 50895-54980
Sequence    

Annotation

kegg
ID sot:102604101
description uncharacterized LOC102604101
nr
ID XP_006356750.1
description PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID C5Z7A7
description Putative uncharacterized protein Sb10g026363 (Fragment) OS=Sorghum bicolor GN=Sb10g026363 PE=4 SV=1
Gene Ontology
ID GO:0003824
description af466646_7 polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_060 0.0 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
2 Hb_007595_020 0.0961959609 - - maturase K [Hevea brasiliensis]
3 Hb_007595_050 0.1144181324 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
4 Hb_000367_220 0.1228832743 - - hypothetical protein RCOM_1470580 [Ricinus communis]
5 Hb_028960_010 0.1243721144 - - phosphoglycerate kinase, putative [Ricinus communis]
6 Hb_068804_110 0.1313054316 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
7 Hb_000186_160 0.1321528297 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
8 Hb_000029_380 0.1346938754 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002044_070 0.1356377375 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
10 Hb_123689_010 0.1392157801 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
11 Hb_156850_020 0.140173923 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
12 Hb_004979_050 0.1455883966 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
13 Hb_010080_070 0.1468984733 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
14 Hb_029622_060 0.1471843712 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
15 Hb_002333_040 0.148296293 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
16 Hb_001584_210 0.149296038 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
17 Hb_003861_150 0.1504508898 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
18 Hb_011900_020 0.1510152531 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
19 Hb_012940_020 0.1526332862 - - zeaxanthin epoxidase, putative [Ricinus communis]
20 Hb_000009_470 0.1534457247 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005228_060 Hb_005228_060 Hb_007595_020 Hb_007595_020 Hb_005228_060--Hb_007595_020 Hb_007595_050 Hb_007595_050 Hb_005228_060--Hb_007595_050 Hb_000367_220 Hb_000367_220 Hb_005228_060--Hb_000367_220 Hb_028960_010 Hb_028960_010 Hb_005228_060--Hb_028960_010 Hb_068804_110 Hb_068804_110 Hb_005228_060--Hb_068804_110 Hb_000186_160 Hb_000186_160 Hb_005228_060--Hb_000186_160 Hb_007595_020--Hb_068804_110 Hb_007595_020--Hb_000367_220 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_002835_090 Hb_002835_090 Hb_007595_050--Hb_002835_090 Hb_007595_050--Hb_007595_020 Hb_011900_020 Hb_011900_020 Hb_007595_050--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_007595_050--Hb_156850_020 Hb_000367_220--Hb_068804_110 Hb_000367_220--Hb_156850_020 Hb_000367_220--Hb_028960_010 Hb_123689_010 Hb_123689_010 Hb_000367_220--Hb_123689_010 Hb_007044_020 Hb_007044_020 Hb_000367_220--Hb_007044_020 Hb_012940_020 Hb_012940_020 Hb_028960_010--Hb_012940_020 Hb_028960_010--Hb_156850_020 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_000359_070 Hb_000359_070 Hb_028960_010--Hb_000359_070 Hb_106552_030 Hb_106552_030 Hb_028960_010--Hb_106552_030 Hb_068804_110--Hb_012940_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_000186_160--Hb_029622_060 Hb_003787_030 Hb_003787_030 Hb_000186_160--Hb_003787_030 Hb_000815_120 Hb_000815_120 Hb_000186_160--Hb_000815_120 Hb_000186_160--Hb_123689_010 Hb_006573_240 Hb_006573_240 Hb_000186_160--Hb_006573_240 Hb_002301_070 Hb_002301_070 Hb_000186_160--Hb_002301_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00794552 0.0127002 0.126854 0.121125 0.00601011 0.01191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0219213 0.0136366 0.61125

CAGE analysis