Hb_005228_070

Information

Type -
Description -
Location Contig5228: 63894-66368
Sequence    

Annotation

kegg
ID vvi:100253986
description putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial
nr
ID XP_012088740.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
swissprot
ID Q9LYV3
description Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1
trembl
ID A0A067JTG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23113 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46879: 65097-65305 , PASA_asmbl_46880: 65311-65921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_070 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
2 Hb_003938_190 0.0945640977 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
3 Hb_000039_160 0.0953380269 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
4 Hb_012325_020 0.1026517309 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
5 Hb_168319_030 0.1030371307 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
6 Hb_085863_030 0.1031206171 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
7 Hb_000063_140 0.1051026192 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
8 Hb_000117_090 0.1065267765 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
9 Hb_004607_030 0.1082348268 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
10 Hb_008725_260 0.1083326503 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
11 Hb_009178_030 0.1085282236 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000549_040 0.1099035524 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
13 Hb_000092_010 0.1110650505 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
14 Hb_000002_400 0.1139253302 transcription factor TF Family: Orphans PREDICTED: ethylene receptor 2 [Jatropha curcas]
15 Hb_004375_150 0.1142310203 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
16 Hb_000086_400 0.1144155281 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_027472_170 0.1148900084 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
18 Hb_027393_030 0.1150054236 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
19 Hb_004374_070 0.1198820938 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
20 Hb_000019_120 0.1212201507 - - PREDICTED: rRNA-processing protein CGR1 [Jatropha curcas]

Gene co-expression network

sample Hb_005228_070 Hb_005228_070 Hb_003938_190 Hb_003938_190 Hb_005228_070--Hb_003938_190 Hb_000039_160 Hb_000039_160 Hb_005228_070--Hb_000039_160 Hb_012325_020 Hb_012325_020 Hb_005228_070--Hb_012325_020 Hb_168319_030 Hb_168319_030 Hb_005228_070--Hb_168319_030 Hb_085863_030 Hb_085863_030 Hb_005228_070--Hb_085863_030 Hb_000063_140 Hb_000063_140 Hb_005228_070--Hb_000063_140 Hb_021576_110 Hb_021576_110 Hb_003938_190--Hb_021576_110 Hb_000676_010 Hb_000676_010 Hb_003938_190--Hb_000676_010 Hb_000002_400 Hb_000002_400 Hb_003938_190--Hb_000002_400 Hb_001085_060 Hb_001085_060 Hb_003938_190--Hb_001085_060 Hb_000140_230 Hb_000140_230 Hb_003938_190--Hb_000140_230 Hb_008566_050 Hb_008566_050 Hb_000039_160--Hb_008566_050 Hb_000117_090 Hb_000117_090 Hb_000039_160--Hb_000117_090 Hb_000529_170 Hb_000529_170 Hb_000039_160--Hb_000529_170 Hb_008725_260 Hb_008725_260 Hb_000039_160--Hb_008725_260 Hb_001245_100 Hb_001245_100 Hb_000039_160--Hb_001245_100 Hb_000155_200 Hb_000155_200 Hb_000039_160--Hb_000155_200 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_003976_030 Hb_003976_030 Hb_012325_020--Hb_003976_030 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_000366_090 Hb_000366_090 Hb_168319_030--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_168319_030--Hb_004375_150 Hb_000019_060 Hb_000019_060 Hb_168319_030--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_000086_400 Hb_000086_400 Hb_085863_030--Hb_000086_400 Hb_009178_030 Hb_009178_030 Hb_085863_030--Hb_009178_030 Hb_000056_240 Hb_000056_240 Hb_085863_030--Hb_000056_240 Hb_085863_030--Hb_008725_260 Hb_016901_010 Hb_016901_010 Hb_085863_030--Hb_016901_010 Hb_000866_220 Hb_000866_220 Hb_085863_030--Hb_000866_220 Hb_000175_460 Hb_000175_460 Hb_000063_140--Hb_000175_460 Hb_010172_050 Hb_010172_050 Hb_000063_140--Hb_010172_050 Hb_000063_140--Hb_085863_030 Hb_003862_050 Hb_003862_050 Hb_000063_140--Hb_003862_050 Hb_005348_140 Hb_005348_140 Hb_000063_140--Hb_005348_140 Hb_001617_050 Hb_001617_050 Hb_000063_140--Hb_001617_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58391 2.06086 1.8739 1.22722 1.34458 2.24355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30395 3.1344 5.25076 1.48479 1.04545

CAGE analysis