Hb_005228_110

Information

Type -
Description -
Location Contig5228: 101762-106473
Sequence    

Annotation

kegg
ID fgr:FG00819.1
description hypothetical protein
nr
ID KFO31214.1
description Cleavage and polyadenylation specificity factor subunit 3 [Fukomys damarensis]
swissprot
ID Q55470
description Uncharacterized protein sll0514 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0514 PE=4 SV=1
trembl
ID A0A091DGI9
description Cleavage and polyadenylation specificity factor subunit 3 OS=Fukomys damarensis GN=H920_07405 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cleavage and polyadenylation specificity factor subunit 3-i-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46886: 103186-103510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_110 0.0 - - Cleavage and polyadenylation specificity factor subunit 3 [Fukomys damarensis]
2 Hb_028872_050 0.1546328312 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
3 Hb_000028_040 0.1684244169 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
4 Hb_002872_020 0.1791796584 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_001959_050 0.1859698222 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
6 Hb_034083_010 0.1886084427 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000932_100 0.1987658436 - - -
8 Hb_073171_110 0.1993664787 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
9 Hb_007447_010 0.2018966712 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
10 Hb_128548_020 0.2027383261 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
11 Hb_004324_250 0.2069571739 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
12 Hb_161072_040 0.2104363514 - - PREDICTED: replication factor C subunit 2 isoform X1 [Jatropha curcas]
13 Hb_010436_020 0.2111478596 - - Dicer-like protein 4 [Morus notabilis]
14 Hb_002025_200 0.2131646707 - - -
15 Hb_001040_170 0.2170853814 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_003506_080 0.2179545815 - - dipeptidyl peptidase IV, putative [Ricinus communis]
17 Hb_000375_310 0.2181317513 - - hypothetical protein JCGZ_18643 [Jatropha curcas]
18 Hb_002233_090 0.218857527 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
19 Hb_000723_260 0.2194111232 - - ethylene insensitive protein, putative [Ricinus communis]
20 Hb_003682_060 0.2197728777 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005228_110 Hb_005228_110 Hb_028872_050 Hb_028872_050 Hb_005228_110--Hb_028872_050 Hb_000028_040 Hb_000028_040 Hb_005228_110--Hb_000028_040 Hb_002872_020 Hb_002872_020 Hb_005228_110--Hb_002872_020 Hb_001959_050 Hb_001959_050 Hb_005228_110--Hb_001959_050 Hb_034083_010 Hb_034083_010 Hb_005228_110--Hb_034083_010 Hb_000932_100 Hb_000932_100 Hb_005228_110--Hb_000932_100 Hb_002111_050 Hb_002111_050 Hb_028872_050--Hb_002111_050 Hb_011224_080 Hb_011224_080 Hb_028872_050--Hb_011224_080 Hb_002659_140 Hb_002659_140 Hb_028872_050--Hb_002659_140 Hb_004650_070 Hb_004650_070 Hb_028872_050--Hb_004650_070 Hb_000352_110 Hb_000352_110 Hb_028872_050--Hb_000352_110 Hb_006816_290 Hb_006816_290 Hb_028872_050--Hb_006816_290 Hb_004512_020 Hb_004512_020 Hb_000028_040--Hb_004512_020 Hb_003656_110 Hb_003656_110 Hb_000028_040--Hb_003656_110 Hb_000028_040--Hb_002872_020 Hb_011344_010 Hb_011344_010 Hb_000028_040--Hb_011344_010 Hb_001427_170 Hb_001427_170 Hb_000028_040--Hb_001427_170 Hb_000028_040--Hb_000352_110 Hb_000429_200 Hb_000429_200 Hb_002872_020--Hb_000429_200 Hb_001136_100 Hb_001136_100 Hb_002872_020--Hb_001136_100 Hb_055590_010 Hb_055590_010 Hb_002872_020--Hb_055590_010 Hb_003506_080 Hb_003506_080 Hb_002872_020--Hb_003506_080 Hb_000599_110 Hb_000599_110 Hb_002872_020--Hb_000599_110 Hb_001136_090 Hb_001136_090 Hb_002872_020--Hb_001136_090 Hb_109168_010 Hb_109168_010 Hb_001959_050--Hb_109168_010 Hb_007304_110 Hb_007304_110 Hb_001959_050--Hb_007304_110 Hb_007447_010 Hb_007447_010 Hb_001959_050--Hb_007447_010 Hb_003030_020 Hb_003030_020 Hb_001959_050--Hb_003030_020 Hb_073171_110 Hb_073171_110 Hb_001959_050--Hb_073171_110 Hb_001959_050--Hb_001136_100 Hb_005227_070 Hb_005227_070 Hb_034083_010--Hb_005227_070 Hb_012055_020 Hb_012055_020 Hb_034083_010--Hb_012055_020 Hb_032531_030 Hb_032531_030 Hb_034083_010--Hb_032531_030 Hb_000984_180 Hb_000984_180 Hb_034083_010--Hb_000984_180 Hb_001040_170 Hb_001040_170 Hb_034083_010--Hb_001040_170 Hb_000230_110 Hb_000230_110 Hb_034083_010--Hb_000230_110 Hb_007426_160 Hb_007426_160 Hb_000932_100--Hb_007426_160 Hb_020665_010 Hb_020665_010 Hb_000932_100--Hb_020665_010 Hb_000062_140 Hb_000062_140 Hb_000932_100--Hb_000062_140 Hb_002025_200 Hb_002025_200 Hb_000932_100--Hb_002025_200 Hb_003206_020 Hb_003206_020 Hb_000932_100--Hb_003206_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85808 0.757709 0.367583 0.498574 17.3543 8.09589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.52074 5.72843 6.79762 3.59332 6.5879

CAGE analysis