Hb_005228_120

Information

Type -
Description -
Location Contig5228: 108967-114340
Sequence    

Annotation

kegg
ID rcu:RCOM_0320830
description phospholipase d beta, putative (EC:3.1.4.4)
nr
ID XP_002530670.1
description phospholipase d beta, putative [Ricinus communis]
swissprot
ID Q9C5Y0
description Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2
trembl
ID B9SXF1
description Phospholipase D OS=Ricinus communis GN=RCOM_0320830 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phospholipase d delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_120 0.0 - - phospholipase d beta, putative [Ricinus communis]
2 Hb_000940_040 0.1181766806 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
3 Hb_000173_210 0.1189884429 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
4 Hb_001946_360 0.1210152307 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
5 Hb_000540_140 0.1221783779 - - zinc binding dehydrogenase, putative [Ricinus communis]
6 Hb_000827_080 0.1242058972 - - catalytic, putative [Ricinus communis]
7 Hb_000608_340 0.1248990108 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
8 Hb_003666_050 0.1257196454 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
9 Hb_000173_370 0.1300432586 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
10 Hb_001195_030 0.1304546422 - - auxilin, putative [Ricinus communis]
11 Hb_000392_280 0.1326441441 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
12 Hb_004531_090 0.1357513492 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
13 Hb_000395_140 0.1360802518 - - Oligopeptide transporter, putative [Ricinus communis]
14 Hb_000181_310 0.1364668771 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
15 Hb_001357_190 0.1395765436 - - ribonuclease III, putative [Ricinus communis]
16 Hb_019871_020 0.14105809 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
17 Hb_007441_070 0.1415766015 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
18 Hb_006631_010 0.1423664136 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
19 Hb_004712_110 0.142489131 - - 30S ribosomal protein S10, putative [Ricinus communis]
20 Hb_000779_040 0.143052979 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005228_120 Hb_005228_120 Hb_000940_040 Hb_000940_040 Hb_005228_120--Hb_000940_040 Hb_000173_210 Hb_000173_210 Hb_005228_120--Hb_000173_210 Hb_001946_360 Hb_001946_360 Hb_005228_120--Hb_001946_360 Hb_000540_140 Hb_000540_140 Hb_005228_120--Hb_000540_140 Hb_000827_080 Hb_000827_080 Hb_005228_120--Hb_000827_080 Hb_000608_340 Hb_000608_340 Hb_005228_120--Hb_000608_340 Hb_007441_070 Hb_007441_070 Hb_000940_040--Hb_007441_070 Hb_019871_020 Hb_019871_020 Hb_000940_040--Hb_019871_020 Hb_011644_020 Hb_011644_020 Hb_000940_040--Hb_011644_020 Hb_004656_060 Hb_004656_060 Hb_000940_040--Hb_004656_060 Hb_000270_140 Hb_000270_140 Hb_000940_040--Hb_000270_140 Hb_000940_040--Hb_000608_340 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_370 Hb_000173_370 Hb_000173_210--Hb_000173_370 Hb_002897_040 Hb_002897_040 Hb_000173_210--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_000173_210--Hb_000619_070 Hb_006631_010 Hb_006631_010 Hb_000173_210--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000173_210--Hb_035360_010 Hb_000317_080 Hb_000317_080 Hb_001946_360--Hb_000317_080 Hb_000395_140 Hb_000395_140 Hb_001946_360--Hb_000395_140 Hb_002311_250 Hb_002311_250 Hb_001946_360--Hb_002311_250 Hb_130177_010 Hb_130177_010 Hb_001946_360--Hb_130177_010 Hb_001341_040 Hb_001341_040 Hb_001946_360--Hb_001341_040 Hb_001195_030 Hb_001195_030 Hb_000540_140--Hb_001195_030 Hb_000540_140--Hb_011644_020 Hb_000181_310 Hb_000181_310 Hb_000540_140--Hb_000181_310 Hb_025557_020 Hb_025557_020 Hb_000540_140--Hb_025557_020 Hb_007305_010 Hb_007305_010 Hb_000540_140--Hb_007305_010 Hb_003006_060 Hb_003006_060 Hb_000540_140--Hb_003006_060 Hb_001357_190 Hb_001357_190 Hb_000827_080--Hb_001357_190 Hb_000827_080--Hb_007441_070 Hb_006002_030 Hb_006002_030 Hb_000827_080--Hb_006002_030 Hb_001433_190 Hb_001433_190 Hb_000827_080--Hb_001433_190 Hb_000827_080--Hb_000608_340 Hb_000779_040 Hb_000779_040 Hb_000608_340--Hb_000779_040 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050 Hb_000608_340--Hb_000619_070 Hb_000608_340--Hb_035360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.782623 0.165642 0.180353 0.061926 1.5143 0.728106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278462 0.10956 0.235037 0.266451 0.116477

CAGE analysis