Hb_005235_030

Information

Type -
Description -
Location Contig5235: 13364-19689
Sequence    

Annotation

kegg
ID egr:104442039
description dolichol phosphate-mannose biosynthesis regulatory protein
nr
ID XP_010053629.1
description PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
swissprot
ID Q2KIN1
description Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3
trembl
ID A0A067E5K7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034893mg PE=4 SV=1
Gene Ontology
ID GO:0030176
description dolichol phosphate-mannose biosynthesis regulatory protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46905: 13447-19513 , PASA_asmbl_46906: 16753-17040
cDNA
(Sanger)
(ID:Location)		 048_C11.ab1: 13488-19513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005235_030 0.0 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
2 Hb_003376_190 0.0798009215 - - syntaxin, putative [Ricinus communis]
3 Hb_179296_010 0.0868624593 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
4 Hb_016734_070 0.0925714815 - - hypothetical_protein [Oryza brachyantha]
5 Hb_001512_080 0.095945291 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
6 Hb_007065_010 0.0970655714 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
7 Hb_000254_050 0.1017659866 - - hypothetical protein VITISV_010510 [Vitis vinifera]
8 Hb_002000_140 0.1029057493 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
9 Hb_005463_140 0.1034314344 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
10 Hb_086639_090 0.1042144379 - - 60S ribosomal protein L7a, putative [Ricinus communis]
11 Hb_000134_070 0.104789716 - - 60S ribosomal protein L6, putative [Ricinus communis]
12 Hb_001989_090 0.1048765434 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
13 Hb_000302_280 0.1054059976 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
14 Hb_017491_060 0.1056153653 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
15 Hb_006915_040 0.1062684915 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
16 Hb_002324_010 0.1063145724 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
17 Hb_005269_080 0.1084498007 - - protein with unknown function [Ricinus communis]
18 Hb_072922_020 0.1096408362 - - SNARE-like superfamily protein [Theobroma cacao]
19 Hb_002110_200 0.1110532844 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000384_120 0.1115346795 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005235_030 Hb_005235_030 Hb_003376_190 Hb_003376_190 Hb_005235_030--Hb_003376_190 Hb_179296_010 Hb_179296_010 Hb_005235_030--Hb_179296_010 Hb_016734_070 Hb_016734_070 Hb_005235_030--Hb_016734_070 Hb_001512_080 Hb_001512_080 Hb_005235_030--Hb_001512_080 Hb_007065_010 Hb_007065_010 Hb_005235_030--Hb_007065_010 Hb_000254_050 Hb_000254_050 Hb_005235_030--Hb_000254_050 Hb_000107_300 Hb_000107_300 Hb_003376_190--Hb_000107_300 Hb_002324_010 Hb_002324_010 Hb_003376_190--Hb_002324_010 Hb_000215_330 Hb_000215_330 Hb_003376_190--Hb_000215_330 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040 Hb_174865_010 Hb_174865_010 Hb_179296_010--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_179296_010--Hb_000735_040 Hb_179296_010--Hb_006915_040 Hb_000134_070 Hb_000134_070 Hb_179296_010--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_179296_010--Hb_000676_160 Hb_179296_010--Hb_001512_080 Hb_002000_140 Hb_002000_140 Hb_016734_070--Hb_002000_140 Hb_000808_190 Hb_000808_190 Hb_016734_070--Hb_000808_190 Hb_000463_130 Hb_000463_130 Hb_016734_070--Hb_000463_130 Hb_001242_140 Hb_001242_140 Hb_016734_070--Hb_001242_140 Hb_016734_070--Hb_000215_330 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_001512_080--Hb_000254_050 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120 Hb_002798_020 Hb_002798_020 Hb_007065_010--Hb_002798_020 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_000016_080 Hb_000016_080 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_000254_050--Hb_002110_200 Hb_000254_050--Hb_000016_080 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_000254_050--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63156 2.50437 9.39914 17.4946 7.93984 15.7226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5449 45.5939 19.8845 11.5241 9.68612

CAGE analysis