Hb_005235_070

Information

Type -
Description -
Location Contig5235: 82242-89533
Sequence    

Annotation

kegg
ID rcu:RCOM_1315290
description Plastid lipid-associated protein 3, chloroplast precursor, putative (EC:1.3.1.74)
nr
ID XP_012081063.1
description PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
swissprot
ID Q94KU5
description Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1
trembl
ID A0A067K5T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17112 PE=4 SV=1
Gene Ontology
ID GO:0009535
description plastid-lipid associated protein pap fibrillin family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46907: 82319-89496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005235_070 0.0 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
2 Hb_000555_020 0.067095357 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
3 Hb_003883_010 0.0716384758 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
4 Hb_102948_010 0.0742386634 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
5 Hb_000107_340 0.0754020479 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
6 Hb_002218_020 0.0770266319 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_002107_050 0.077268214 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
8 Hb_001430_020 0.0863692538 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
9 Hb_000673_010 0.0875634556 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
10 Hb_003071_030 0.09546627 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
11 Hb_009847_030 0.0979028346 - - zinc finger family protein [Populus trichocarpa]
12 Hb_000788_030 0.1004431667 - - PREDICTED: dynamin-2A [Jatropha curcas]
13 Hb_000318_220 0.1005714907 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003529_140 0.1009395544 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
15 Hb_002915_010 0.1032997999 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
16 Hb_006569_040 0.103551628 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
17 Hb_001766_070 0.1036536317 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010620_050 0.1047228161 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
19 Hb_000680_010 0.105106644 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
20 Hb_000537_100 0.1054330409 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005235_070 Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_005235_070--Hb_000555_020 Hb_003883_010 Hb_003883_010 Hb_005235_070--Hb_003883_010 Hb_102948_010 Hb_102948_010 Hb_005235_070--Hb_102948_010 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_002218_020 Hb_002218_020 Hb_005235_070--Hb_002218_020 Hb_002107_050 Hb_002107_050 Hb_005235_070--Hb_002107_050 Hb_000555_020--Hb_000107_340 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_000555_020--Hb_102948_010 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120 Hb_003883_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_003883_010--Hb_000680_010 Hb_002915_010 Hb_002915_010 Hb_003883_010--Hb_002915_010 Hb_003883_010--Hb_002218_020 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220 Hb_102948_010--Hb_002218_020 Hb_001430_020 Hb_001430_020 Hb_102948_010--Hb_001430_020 Hb_087313_010 Hb_087313_010 Hb_102948_010--Hb_087313_010 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_000035_090 Hb_000035_090 Hb_000107_340--Hb_000035_090 Hb_000107_340--Hb_102948_010 Hb_003747_120 Hb_003747_120 Hb_000107_340--Hb_003747_120 Hb_022378_010 Hb_022378_010 Hb_000107_340--Hb_022378_010 Hb_002218_020--Hb_001430_020 Hb_002218_020--Hb_012438_030 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_010620_050 Hb_010620_050 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_002107_050--Hb_160271_010 Hb_012779_080 Hb_012779_080 Hb_002107_050--Hb_012779_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3051 30.903 52.9544 27.3636 16.3036 10.7117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4629 22.2071 9.98268 11.4061 50.3996

CAGE analysis