Hb_005237_040

Information

Type -
Description -
Location Contig5237: 63857-65959
Sequence    

Annotation

kegg
ID rcu:RCOM_1589570
description hypothetical protein
nr
ID XP_012068305.1
description PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
swissprot
ID Q4WRW0
description Protein ssh4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ssh4 PE=3 SV=2
trembl
ID A0A067LCB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16106 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46915: 63819-65085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005237_040 0.0 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
2 Hb_009785_010 0.0606395581 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
3 Hb_014037_010 0.0611031759 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
4 Hb_004884_200 0.0712285464 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
5 Hb_000236_050 0.0778370058 - - phosphate transporter [Manihot esculenta]
6 Hb_006711_020 0.0847718767 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
7 Hb_002391_350 0.0850955124 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
8 Hb_005211_090 0.0962761655 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
9 Hb_009627_040 0.1023709305 - - Lipase class 3-related protein, putative [Theobroma cacao]
10 Hb_002686_390 0.1103010939 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_000029_370 0.1107301249 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_000335_050 0.112812958 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
13 Hb_010519_020 0.1158897391 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
14 Hb_000317_220 0.1181392624 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000011_120 0.1192427502 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
16 Hb_000010_200 0.1199107077 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_175758_010 0.1218510343 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
18 Hb_003807_020 0.1249352399 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
19 Hb_007123_020 0.1249904354 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
20 Hb_000034_030 0.1273322522 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_005237_040 Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_005237_040--Hb_009785_010 Hb_014037_010 Hb_014037_010 Hb_005237_040--Hb_014037_010 Hb_004884_200 Hb_004884_200 Hb_005237_040--Hb_004884_200 Hb_000236_050 Hb_000236_050 Hb_005237_040--Hb_000236_050 Hb_006711_020 Hb_006711_020 Hb_005237_040--Hb_006711_020 Hb_002391_350 Hb_002391_350 Hb_005237_040--Hb_002391_350 Hb_009785_010--Hb_004884_200 Hb_009785_010--Hb_014037_010 Hb_009785_010--Hb_006711_020 Hb_009785_010--Hb_000236_050 Hb_009785_010--Hb_002391_350 Hb_014037_010--Hb_004884_200 Hb_014037_010--Hb_000236_050 Hb_014037_010--Hb_002391_350 Hb_005211_090 Hb_005211_090 Hb_014037_010--Hb_005211_090 Hb_004884_200--Hb_002391_350 Hb_009627_040 Hb_009627_040 Hb_004884_200--Hb_009627_040 Hb_004884_200--Hb_006711_020 Hb_000236_050--Hb_004884_200 Hb_000236_050--Hb_005211_090 Hb_000236_050--Hb_002391_350 Hb_010519_020 Hb_010519_020 Hb_006711_020--Hb_010519_020 Hb_006711_020--Hb_002391_350 Hb_002686_390 Hb_002686_390 Hb_006711_020--Hb_002686_390 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_002391_350--Hb_009627_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.86558 1.49909 2.2914 0 0.0220475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171814 0.0450586 0.0424454 9.0917 1.46553

CAGE analysis