Hb_005237_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5237: 73832-75142
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02520g
description hypothetical protein
nr
ID XP_012068306.1
description PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16107 PE=4 SV=1
Gene Ontology
ID GO:0046872
description c2h2-like zinc finger protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005237_050 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
2 Hb_003020_220 0.0854907034 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
3 Hb_006420_050 0.0865032042 - - helicase, putative [Ricinus communis]
4 Hb_001049_110 0.1004957004 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_005116_050 0.1048425757 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_082609_010 0.1078350512 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
7 Hb_018133_090 0.1081677183 - - conserved hypothetical protein [Ricinus communis]
8 Hb_015941_020 0.1085534707 - - -
9 Hb_001671_010 0.1123986746 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
10 Hb_007747_210 0.1133745229 - - unnamed protein product [Vitis vinifera]
11 Hb_000510_290 0.1149401562 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
12 Hb_001258_030 0.1164238894 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
13 Hb_000702_080 0.1191402675 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
14 Hb_000352_270 0.1220273981 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
15 Hb_086639_040 0.1225074639 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
16 Hb_000130_220 0.123108686 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
17 Hb_103118_010 0.123798795 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
18 Hb_027654_060 0.1262655613 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
19 Hb_079312_010 0.1267910551 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002988_040 0.126896401 - - -

Gene co-expression network

sample Hb_005237_050 Hb_005237_050 Hb_003020_220 Hb_003020_220 Hb_005237_050--Hb_003020_220 Hb_006420_050 Hb_006420_050 Hb_005237_050--Hb_006420_050 Hb_001049_110 Hb_001049_110 Hb_005237_050--Hb_001049_110 Hb_005116_050 Hb_005116_050 Hb_005237_050--Hb_005116_050 Hb_082609_010 Hb_082609_010 Hb_005237_050--Hb_082609_010 Hb_018133_090 Hb_018133_090 Hb_005237_050--Hb_018133_090 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_003020_220--Hb_082609_010 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290 Hb_000120_040 Hb_000120_040 Hb_006420_050--Hb_000120_040 Hb_000130_220 Hb_000130_220 Hb_006420_050--Hb_000130_220 Hb_006420_050--Hb_003020_220 Hb_006420_050--Hb_005116_050 Hb_006420_050--Hb_002988_040 Hb_015941_020 Hb_015941_020 Hb_001049_110--Hb_015941_020 Hb_000061_210 Hb_000061_210 Hb_001049_110--Hb_000061_210 Hb_005686_090 Hb_005686_090 Hb_001049_110--Hb_005686_090 Hb_001049_110--Hb_018133_090 Hb_000295_080 Hb_000295_080 Hb_001049_110--Hb_000295_080 Hb_000556_090 Hb_000556_090 Hb_001049_110--Hb_000556_090 Hb_005116_050--Hb_000130_220 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_000482_040 Hb_000482_040 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_082609_010--Hb_000352_270 Hb_000614_220 Hb_000614_220 Hb_082609_010--Hb_000614_220 Hb_001898_160 Hb_001898_160 Hb_082609_010--Hb_001898_160 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_000337_050 Hb_000337_050 Hb_018133_090--Hb_000337_050 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_018133_090--Hb_015941_020 Hb_002811_130 Hb_002811_130 Hb_018133_090--Hb_002811_130 Hb_018133_090--Hb_103118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6281 7.4649 6.47602 4.66413 9.09585 7.00226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0451 17.0686 16.2662 8.47043 26.4678

CAGE analysis