Hb_005237_060

Information

Type transcription factor
Description TF Family: ERF
Location Contig5237: 82432-82908
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02530g
description dehydration responsive element binding family protein
nr
ID AGC51783.1
description ERF/AP2 domain-containing transcription factor [Manihot esculenta]
swissprot
ID Q9SNE1
description Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1
trembl
ID V9M5D1
description ERF/AP2 domain-containing transcription factor OS=Manihot esculenta GN=RAP2.1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf011-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46917: 82173-82404 , PASA_asmbl_46918: 82410-83654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005237_060 0.0 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
2 Hb_000684_420 0.0736718949 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_073171_080 0.0766712179 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
4 Hb_005701_040 0.0777536853 - - cellular nucleic acid binding protein, putative [Ricinus communis]
5 Hb_012305_070 0.0793398167 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000088_200 0.079487264 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
7 Hb_000236_280 0.0800467724 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
8 Hb_004678_060 0.0815395437 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
9 Hb_009411_020 0.0831001694 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
10 Hb_003006_060 0.0839336435 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
11 Hb_001663_110 0.0847429506 - - RNA binding protein, putative [Ricinus communis]
12 Hb_000175_390 0.0859190357 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
13 Hb_001969_040 0.0890015711 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_009265_080 0.0891872323 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
15 Hb_003656_160 0.0897997652 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
16 Hb_004044_020 0.0898711551 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
17 Hb_002400_180 0.0901552995 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004195_280 0.0903963917 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
19 Hb_000186_280 0.0907941702 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
20 Hb_008253_010 0.0912343888 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]

Gene co-expression network

sample Hb_005237_060 Hb_005237_060 Hb_000684_420 Hb_000684_420 Hb_005237_060--Hb_000684_420 Hb_073171_080 Hb_073171_080 Hb_005237_060--Hb_073171_080 Hb_005701_040 Hb_005701_040 Hb_005237_060--Hb_005701_040 Hb_012305_070 Hb_012305_070 Hb_005237_060--Hb_012305_070 Hb_000088_200 Hb_000088_200 Hb_005237_060--Hb_000088_200 Hb_000236_280 Hb_000236_280 Hb_005237_060--Hb_000236_280 Hb_000076_080 Hb_000076_080 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_002400_180 Hb_002400_180 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_000684_420--Hb_073171_080 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_073171_080--Hb_000236_280 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_073171_080--Hb_002400_180 Hb_001504_150 Hb_001504_150 Hb_005701_040--Hb_001504_150 Hb_004678_020 Hb_004678_020 Hb_005701_040--Hb_004678_020 Hb_005701_040--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_005701_040--Hb_005914_230 Hb_023001_020 Hb_023001_020 Hb_005701_040--Hb_023001_020 Hb_003656_160 Hb_003656_160 Hb_005701_040--Hb_003656_160 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_004044_020 Hb_004044_020 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000104_080 Hb_000104_080 Hb_000236_280--Hb_000104_080 Hb_000236_280--Hb_004044_020 Hb_000236_280--Hb_004525_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.021 31.4071 27.8818 12.3656 79.7225 95.6902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.3255 36.8342 34.0423 12.7652 20.6648

CAGE analysis