Hb_005245_070

Information

Type -
Description -
Location Contig5245: 80569-81609
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17190g
description hypothetical protein
nr
ID XP_012084243.1
description PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9SE36
description Uncharacterized protein OS=Morus notabilis GN=L484_018490 PE=4 SV=1
Gene Ontology
ID GO:0005739
description fanconi anemia group d2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46925: 80675-82872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005245_070 0.0 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
2 Hb_000367_030 0.1287208331 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
3 Hb_000975_180 0.1324433363 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
4 Hb_003502_100 0.1466588837 - - -
5 Hb_021924_010 0.1486665926 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
6 Hb_004429_110 0.1552597441 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_004128_040 0.156078068 - - -
8 Hb_005054_040 0.1601209848 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
9 Hb_014834_030 0.1655065976 - - -
10 Hb_002316_120 0.1691403107 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
11 Hb_000367_210 0.170808607 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
12 Hb_008748_020 0.1713819383 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
13 Hb_002843_210 0.171755386 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
14 Hb_006541_020 0.1729474104 - - unknown [Lotus japonicus]
15 Hb_002838_030 0.1731442596 - - 40S ribosomal protein S25A [Hevea brasiliensis]
16 Hb_000789_110 0.1744371664 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
17 Hb_009778_040 0.1756334551 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
18 Hb_001269_490 0.1772921243 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000181_380 0.1779254401 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
20 Hb_001935_150 0.1785575408 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_005245_070 Hb_005245_070 Hb_000367_030 Hb_000367_030 Hb_005245_070--Hb_000367_030 Hb_000975_180 Hb_000975_180 Hb_005245_070--Hb_000975_180 Hb_003502_100 Hb_003502_100 Hb_005245_070--Hb_003502_100 Hb_021924_010 Hb_021924_010 Hb_005245_070--Hb_021924_010 Hb_004429_110 Hb_004429_110 Hb_005245_070--Hb_004429_110 Hb_004128_040 Hb_004128_040 Hb_005245_070--Hb_004128_040 Hb_006718_010 Hb_006718_010 Hb_000367_030--Hb_006718_010 Hb_006541_020 Hb_006541_020 Hb_000367_030--Hb_006541_020 Hb_002843_210 Hb_002843_210 Hb_000367_030--Hb_002843_210 Hb_000025_240 Hb_000025_240 Hb_000367_030--Hb_000025_240 Hb_007520_060 Hb_007520_060 Hb_000367_030--Hb_007520_060 Hb_000975_180--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_000975_180--Hb_001488_400 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_003502_100--Hb_004128_040 Hb_003502_100--Hb_000975_180 Hb_001842_050 Hb_001842_050 Hb_003502_100--Hb_001842_050 Hb_003502_100--Hb_000367_030 Hb_009778_040 Hb_009778_040 Hb_003502_100--Hb_009778_040 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_004128_040--Hb_004429_110 Hb_021056_010 Hb_021056_010 Hb_004128_040--Hb_021056_010 Hb_004128_040--Hb_021924_010 Hb_002232_470 Hb_002232_470 Hb_004128_040--Hb_002232_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3467 5.33181 4.97447 108.066 11.4937 29.4512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.721 219.309 47.7042 43.314 5.2541

CAGE analysis