Hb_005245_110

Information

Type -
Description -
Location Contig5245: 106199-108200
Sequence    

Annotation

kegg
ID rcu:RCOM_1211400
description ribosomal protein L5, putative
nr
ID KDO45956.1
description hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
swissprot
ID Q6UNT2
description 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1
trembl
ID A0A067E4W9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0225141mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46938: 107100-107941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005245_110 0.0 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
2 Hb_003921_010 0.0272111649 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005605_010 0.030101833 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
4 Hb_004837_230 0.0476515965 - - unknown [Populus trichocarpa]
5 Hb_000083_020 0.0517518082 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
6 Hb_000482_170 0.053664045 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
7 Hb_001823_010 0.0598260196 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
8 Hb_000191_090 0.0650688508 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
9 Hb_007101_120 0.0678670362 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
10 Hb_000003_490 0.0716531564 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
11 Hb_006665_020 0.0716735189 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_006901_010 0.0736901442 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
13 Hb_099182_010 0.081752783 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
14 Hb_020805_050 0.0822153141 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
15 Hb_004525_010 0.0853230309 - - late embryogenesis abundant, putative [Ricinus communis]
16 Hb_002014_140 0.0877362185 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
17 Hb_000937_010 0.0888144085 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000985_150 0.0888749606 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
19 Hb_008484_080 0.090099841 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
20 Hb_001621_090 0.0944622716 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]

Gene co-expression network

sample Hb_005245_110 Hb_005245_110 Hb_003921_010 Hb_003921_010 Hb_005245_110--Hb_003921_010 Hb_005605_010 Hb_005605_010 Hb_005245_110--Hb_005605_010 Hb_004837_230 Hb_004837_230 Hb_005245_110--Hb_004837_230 Hb_000083_020 Hb_000083_020 Hb_005245_110--Hb_000083_020 Hb_000482_170 Hb_000482_170 Hb_005245_110--Hb_000482_170 Hb_001823_010 Hb_001823_010 Hb_005245_110--Hb_001823_010 Hb_003921_010--Hb_005605_010 Hb_003921_010--Hb_004837_230 Hb_000003_490 Hb_000003_490 Hb_003921_010--Hb_000003_490 Hb_003921_010--Hb_001823_010 Hb_000191_090 Hb_000191_090 Hb_003921_010--Hb_000191_090 Hb_005605_010--Hb_000083_020 Hb_005605_010--Hb_000482_170 Hb_005605_010--Hb_004837_230 Hb_006901_010 Hb_006901_010 Hb_005605_010--Hb_006901_010 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_007101_120 Hb_007101_120 Hb_004837_230--Hb_007101_120 Hb_004837_230--Hb_000482_170 Hb_000083_020--Hb_001823_010 Hb_000083_020--Hb_006901_010 Hb_000083_020--Hb_000482_170 Hb_002014_140 Hb_002014_140 Hb_000083_020--Hb_002014_140 Hb_000482_170--Hb_006901_010 Hb_000482_170--Hb_002014_140 Hb_000482_170--Hb_001823_010 Hb_001736_010 Hb_001736_010 Hb_001823_010--Hb_001736_010 Hb_001823_010--Hb_000003_490 Hb_001823_010--Hb_005605_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.048592 4.19354 0.337289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.88616

CAGE analysis