Hb_005245_120

Information

Type -
Description -
Location Contig5245: 108582-112746
Sequence    

Annotation

kegg
ID rcu:RCOM_1211390
description XPA-binding protein, putative
nr
ID XP_002524557.1
description XPA-binding protein, putative [Ricinus communis]
swissprot
ID Q6ZM63
description GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2
trembl
ID B9SEY8
description XPA-binding protein, putative OS=Ricinus communis GN=RCOM_1211390 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gpn-loop gtpase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46939: 108409-112864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005245_120 0.0 - - XPA-binding protein, putative [Ricinus communis]
2 Hb_032202_100 0.0909623828 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_000926_200 0.0915620992 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
4 Hb_001804_080 0.0923444027 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
5 Hb_000116_490 0.0972857427 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
6 Hb_001357_310 0.0974268267 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
7 Hb_001191_080 0.0999014853 - - protein with unknown function [Ricinus communis]
8 Hb_007741_130 0.10205375 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
9 Hb_010775_030 0.1031373733 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
10 Hb_040819_010 0.1042273598 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000580_100 0.1050717036 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
12 Hb_000300_260 0.1052650357 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
13 Hb_004807_020 0.1061663298 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
14 Hb_001025_090 0.109411757 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
15 Hb_146255_020 0.1101450723 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
16 Hb_002092_120 0.110220395 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
17 Hb_000130_270 0.1106899933 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
18 Hb_000176_020 0.1120706435 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
19 Hb_007850_030 0.112269041 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
20 Hb_000035_160 0.1137688212 - - PREDICTED: formin-like protein 18 [Jatropha curcas]

Gene co-expression network

sample Hb_005245_120 Hb_005245_120 Hb_032202_100 Hb_032202_100 Hb_005245_120--Hb_032202_100 Hb_000926_200 Hb_000926_200 Hb_005245_120--Hb_000926_200 Hb_001804_080 Hb_001804_080 Hb_005245_120--Hb_001804_080 Hb_000116_490 Hb_000116_490 Hb_005245_120--Hb_000116_490 Hb_001357_310 Hb_001357_310 Hb_005245_120--Hb_001357_310 Hb_001191_080 Hb_001191_080 Hb_005245_120--Hb_001191_080 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_001804_080--Hb_000946_090 Hb_001804_080--Hb_000116_490 Hb_001804_080--Hb_032202_100 Hb_000270_310 Hb_000270_310 Hb_001804_080--Hb_000270_310 Hb_002307_180 Hb_002307_180 Hb_001804_080--Hb_002307_180 Hb_005288_130 Hb_005288_130 Hb_000116_490--Hb_005288_130 Hb_000116_490--Hb_032202_100 Hb_000116_490--Hb_000946_090 Hb_002303_020 Hb_002303_020 Hb_000116_490--Hb_002303_020 Hb_000116_490--Hb_000270_310 Hb_010775_030 Hb_010775_030 Hb_001357_310--Hb_010775_030 Hb_007257_060 Hb_007257_060 Hb_001357_310--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_001357_310--Hb_002014_010 Hb_012092_050 Hb_012092_050 Hb_001357_310--Hb_012092_050 Hb_000402_150 Hb_000402_150 Hb_001357_310--Hb_000402_150 Hb_006588_060 Hb_006588_060 Hb_001357_310--Hb_006588_060 Hb_007741_130 Hb_007741_130 Hb_001191_080--Hb_007741_130 Hb_004712_190 Hb_004712_190 Hb_001191_080--Hb_004712_190 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_001191_080--Hb_000926_200 Hb_014231_020 Hb_014231_020 Hb_001191_080--Hb_014231_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.07448 14.4713 26.7353 20.5754 7.28589 6.42199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.81418 22.0621 7.50714 13.4737 7.53047

CAGE analysis