Hb_005245_130

Information

Type -
Description -
Location Contig5245: 113337-116351
Sequence    

Annotation

kegg
ID vvi:100852824
description uncharacterized LOC100852824
nr
ID XP_012084320.1
description PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15057 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46940: 113093-113573 , PASA_asmbl_46941: 113630-114090 , PASA_asmbl_46942: 114215-114793 , PASA_asmbl_46944: 116052-116284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005245_130 0.0 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
2 Hb_004934_090 0.0577323504 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
3 Hb_003406_010 0.0591439665 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
4 Hb_000803_300 0.0604414985 - - nuclear movement protein nudc, putative [Ricinus communis]
5 Hb_004096_030 0.0658805228 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
6 Hb_005276_210 0.0662953623 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
7 Hb_031939_010 0.0686742208 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_000522_090 0.0707718127 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
9 Hb_001014_050 0.0708606365 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
10 Hb_002030_030 0.0717182219 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_000034_100 0.0717542951 - - dnajc14 protein, putative [Ricinus communis]
12 Hb_000236_100 0.0727536707 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
13 Hb_011942_080 0.0729668408 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
14 Hb_054865_100 0.0741261814 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
15 Hb_005188_050 0.0744703152 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
16 Hb_002097_090 0.0757678529 - - Splicing factor 3A subunit, putative [Ricinus communis]
17 Hb_066182_010 0.0764478234 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_005532_050 0.0770479 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_001014_010 0.0775052416 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
20 Hb_009620_040 0.0780301681 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_005245_130 Hb_005245_130 Hb_004934_090 Hb_004934_090 Hb_005245_130--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_005245_130--Hb_003406_010 Hb_000803_300 Hb_000803_300 Hb_005245_130--Hb_000803_300 Hb_004096_030 Hb_004096_030 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004934_090--Hb_004096_030 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_001019_230 Hb_001019_230 Hb_004096_030--Hb_001019_230 Hb_000134_090 Hb_000134_090 Hb_004096_030--Hb_000134_090 Hb_004096_030--Hb_002030_030 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0813 7.7442 4.62606 3.35219 13.8939 13.5257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.462 8.83274 7.38598 5.60198 4.23083

CAGE analysis