Hb_005245_140

Information

Type -
Description -
Location Contig5245: 119676-126941
Sequence    

Annotation

kegg
ID rcu:RCOM_1211160
description ribonuclease t2, putative (EC:3.1.27.1)
nr
ID XP_012084328.1
description PREDICTED: ribonuclease 2 [Jatropha curcas]
swissprot
ID P42814
description Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1
trembl
ID A0A067LDA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15058 PE=3 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46946: 117758-124065 , PASA_asmbl_46947: 117758-124065 , PASA_asmbl_46948: 119533-120328 , PASA_asmbl_46949: 117758-123061 , PASA_asmbl_46950: 117758-123068 , PASA_asmbl_46952: 119119-122505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005245_140 0.0 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
2 Hb_000165_090 0.1040062035 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
3 Hb_091318_010 0.1225701349 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
4 Hb_004678_030 0.1242421466 - - fructokinase [Manihot esculenta]
5 Hb_000030_020 0.1371166383 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
6 Hb_010315_100 0.137919693 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
7 Hb_002110_170 0.1402621206 - - hypothetical protein CICLE_v10002406mg [Citrus clementina]
8 Hb_001951_190 0.1427879184 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
9 Hb_000008_200 0.1435975422 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
10 Hb_000654_050 0.1443125569 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
11 Hb_002235_370 0.1458729387 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
12 Hb_001188_050 0.1478519496 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007192_050 0.1510518825 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
14 Hb_000424_030 0.1512848135 - - conserved hypothetical protein [Ricinus communis]
15 Hb_186247_010 0.1527326094 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
16 Hb_005408_080 0.1548333785 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
17 Hb_000247_140 0.1572089547 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
18 Hb_006829_070 0.1579915747 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
19 Hb_003606_050 0.1599979938 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
20 Hb_150440_010 0.160430792 - - -

Gene co-expression network

sample Hb_005245_140 Hb_005245_140 Hb_000165_090 Hb_000165_090 Hb_005245_140--Hb_000165_090 Hb_091318_010 Hb_091318_010 Hb_005245_140--Hb_091318_010 Hb_004678_030 Hb_004678_030 Hb_005245_140--Hb_004678_030 Hb_000030_020 Hb_000030_020 Hb_005245_140--Hb_000030_020 Hb_010315_100 Hb_010315_100 Hb_005245_140--Hb_010315_100 Hb_002110_170 Hb_002110_170 Hb_005245_140--Hb_002110_170 Hb_000165_090--Hb_000030_020 Hb_000069_300 Hb_000069_300 Hb_000165_090--Hb_000069_300 Hb_003667_020 Hb_003667_020 Hb_000165_090--Hb_003667_020 Hb_008511_040 Hb_008511_040 Hb_000165_090--Hb_008511_040 Hb_001862_030 Hb_001862_030 Hb_000165_090--Hb_001862_030 Hb_029253_010 Hb_029253_010 Hb_091318_010--Hb_029253_010 Hb_000008_200 Hb_000008_200 Hb_091318_010--Hb_000008_200 Hb_004679_040 Hb_004679_040 Hb_091318_010--Hb_004679_040 Hb_005357_110 Hb_005357_110 Hb_091318_010--Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_091318_010--Hb_000032_410 Hb_000915_130 Hb_000915_130 Hb_091318_010--Hb_000915_130 Hb_000654_050 Hb_000654_050 Hb_004678_030--Hb_000654_050 Hb_000027_170 Hb_000027_170 Hb_004678_030--Hb_000027_170 Hb_002463_050 Hb_002463_050 Hb_004678_030--Hb_002463_050 Hb_001019_160 Hb_001019_160 Hb_004678_030--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_004678_030--Hb_000061_310 Hb_002026_020 Hb_002026_020 Hb_000030_020--Hb_002026_020 Hb_012286_060 Hb_012286_060 Hb_000030_020--Hb_012286_060 Hb_005348_150 Hb_005348_150 Hb_000030_020--Hb_005348_150 Hb_000599_330 Hb_000599_330 Hb_000030_020--Hb_000599_330 Hb_000363_180 Hb_000363_180 Hb_010315_100--Hb_000363_180 Hb_002235_370 Hb_002235_370 Hb_010315_100--Hb_002235_370 Hb_002539_050 Hb_002539_050 Hb_010315_100--Hb_002539_050 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_186247_010 Hb_186247_010 Hb_010315_100--Hb_186247_010 Hb_000196_010 Hb_000196_010 Hb_010315_100--Hb_000196_010 Hb_002552_010 Hb_002552_010 Hb_002110_170--Hb_002552_010 Hb_005532_020 Hb_005532_020 Hb_002110_170--Hb_005532_020 Hb_000622_330 Hb_000622_330 Hb_002110_170--Hb_000622_330 Hb_002740_100 Hb_002740_100 Hb_002110_170--Hb_002740_100 Hb_005724_040 Hb_005724_040 Hb_002110_170--Hb_005724_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.543264 7.97466 14.1755 17.1885 1.02082 0.97914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27734 1.25588 0 2.83717 6.20181

CAGE analysis