Hb_005250_030

Information

Type -
Description -
Location Contig5250: 44260-48967
Sequence    

Annotation

kegg
ID tcc:TCM_001536
description PHD finger transcription factor-like protein isoform 1
nr
ID XP_012079810.1
description PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
swissprot
ID A2A8L1
description Chromodomain-helicase-DNA-binding protein 5 OS=Mus musculus GN=Chd5 PE=1 SV=1
trembl
ID A0A061DKN6
description PHD finger transcription factor-like protein isoform 3 OS=Theobroma cacao GN=TCM_001536 PE=4 SV=1
Gene Ontology
ID GO:0005515
description phd finger transcription factor-like protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46968: 8234-48981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005250_030 0.0 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
2 Hb_007545_130 0.0671460082 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
3 Hb_000815_170 0.0782743205 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
4 Hb_013459_010 0.0783606831 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
5 Hb_006618_050 0.0846030005 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
6 Hb_156279_010 0.0852396337 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
7 Hb_003506_050 0.0883236267 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_012098_070 0.091918562 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
9 Hb_005801_020 0.0946290924 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
10 Hb_009252_040 0.0994245607 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
11 Hb_000033_110 0.1005371044 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
12 Hb_011616_020 0.1019284297 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
13 Hb_002631_250 0.1040469581 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
14 Hb_000714_040 0.1052772085 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
15 Hb_000479_170 0.1060997497 - - chaperone clpb, putative [Ricinus communis]
16 Hb_000087_140 0.1070014021 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
17 Hb_000349_240 0.108840822 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
18 Hb_099270_030 0.1092465634 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
19 Hb_002368_070 0.1096043404 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
20 Hb_000331_560 0.1096556107 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]

Gene co-expression network

sample Hb_005250_030 Hb_005250_030 Hb_007545_130 Hb_007545_130 Hb_005250_030--Hb_007545_130 Hb_000815_170 Hb_000815_170 Hb_005250_030--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_005250_030--Hb_013459_010 Hb_006618_050 Hb_006618_050 Hb_005250_030--Hb_006618_050 Hb_156279_010 Hb_156279_010 Hb_005250_030--Hb_156279_010 Hb_003506_050 Hb_003506_050 Hb_005250_030--Hb_003506_050 Hb_007545_130--Hb_003506_050 Hb_007545_130--Hb_013459_010 Hb_000925_090 Hb_000925_090 Hb_007545_130--Hb_000925_090 Hb_002600_060 Hb_002600_060 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_000815_170--Hb_156279_010 Hb_005801_020 Hb_005801_020 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040 Hb_013459_010--Hb_000925_090 Hb_013459_010--Hb_135572_010 Hb_013459_010--Hb_000714_040 Hb_013459_010--Hb_000815_170 Hb_006618_050--Hb_003506_050 Hb_006618_050--Hb_007545_130 Hb_006618_050--Hb_000815_170 Hb_006618_050--Hb_156279_010 Hb_002368_070 Hb_002368_070 Hb_006618_050--Hb_002368_070 Hb_156279_010--Hb_005801_020 Hb_099270_030 Hb_099270_030 Hb_156279_010--Hb_099270_030 Hb_006295_020 Hb_006295_020 Hb_156279_010--Hb_006295_020 Hb_003506_050--Hb_002600_060 Hb_003506_050--Hb_000925_090 Hb_000331_560 Hb_000331_560 Hb_003506_050--Hb_000331_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63753 3.45456 2.56961 2.09645 3.45518 4.79781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41565 1.38489 2.55 3.73812 10.8603

CAGE analysis