Hb_005253_020

Information

Type -
Description -
Location Contig5253: 6245-8581
Sequence    

Annotation

kegg
ID rcu:RCOM_0344410
description hypothetical protein
nr
ID XP_012067055.1
description PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01854 PE=4 SV=1
Gene Ontology
ID GO:0005634
description PREDICTED: uncharacterized protein LOC105629998

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005253_020 0.0 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
2 Hb_000003_110 0.1217625538 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_002292_080 0.1224611294 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_012518_080 0.1299007584 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
5 Hb_000017_250 0.1331353102 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
6 Hb_000735_020 0.1378121796 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
7 Hb_000003_210 0.1433803637 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
8 Hb_000984_130 0.1454891789 - - tubulin [Ornithogalum longebracteatum]
9 Hb_000093_090 0.1483995333 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
10 Hb_000120_940 0.1493091386 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
11 Hb_002900_180 0.1509509172 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
12 Hb_002701_030 0.1519741754 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
13 Hb_000297_140 0.1549821154 - - hypothetical protein RCOM_0293450 [Ricinus communis]
14 Hb_000997_080 0.1580952458 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
15 Hb_025787_020 0.1586735439 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
16 Hb_001863_010 0.1623475105 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
17 Hb_000303_060 0.1624995184 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_006002_050 0.1641001702 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
19 Hb_003050_020 0.1643945089 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
20 Hb_064546_010 0.1645999453 - - PREDICTED: peroxidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005253_020 Hb_005253_020 Hb_000003_110 Hb_000003_110 Hb_005253_020--Hb_000003_110 Hb_002292_080 Hb_002292_080 Hb_005253_020--Hb_002292_080 Hb_012518_080 Hb_012518_080 Hb_005253_020--Hb_012518_080 Hb_000017_250 Hb_000017_250 Hb_005253_020--Hb_000017_250 Hb_000735_020 Hb_000735_020 Hb_005253_020--Hb_000735_020 Hb_000003_210 Hb_000003_210 Hb_005253_020--Hb_000003_210 Hb_061222_010 Hb_061222_010 Hb_000003_110--Hb_061222_010 Hb_005784_060 Hb_005784_060 Hb_000003_110--Hb_005784_060 Hb_002900_180 Hb_002900_180 Hb_000003_110--Hb_002900_180 Hb_000003_110--Hb_002292_080 Hb_001616_100 Hb_001616_100 Hb_000003_110--Hb_001616_100 Hb_002292_080--Hb_012518_080 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_000093_090 Hb_000093_090 Hb_002292_080--Hb_000093_090 Hb_002292_080--Hb_000735_020 Hb_000162_190 Hb_000162_190 Hb_002292_080--Hb_000162_190 Hb_003935_040 Hb_003935_040 Hb_002292_080--Hb_003935_040 Hb_012518_080--Hb_000735_020 Hb_001085_190 Hb_001085_190 Hb_012518_080--Hb_001085_190 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_033312_070 Hb_033312_070 Hb_012518_080--Hb_033312_070 Hb_011918_070 Hb_011918_070 Hb_012518_080--Hb_011918_070 Hb_002701_030 Hb_002701_030 Hb_000017_250--Hb_002701_030 Hb_004705_060 Hb_004705_060 Hb_000017_250--Hb_004705_060 Hb_085829_010 Hb_085829_010 Hb_000017_250--Hb_085829_010 Hb_000853_250 Hb_000853_250 Hb_000017_250--Hb_000853_250 Hb_000017_250--Hb_000162_190 Hb_025787_020 Hb_025787_020 Hb_000017_250--Hb_025787_020 Hb_000735_020--Hb_001085_190 Hb_000735_020--Hb_011918_070 Hb_000735_020--Hb_033312_070 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110 Hb_132840_150 Hb_132840_150 Hb_000003_210--Hb_132840_150 Hb_003583_010 Hb_003583_010 Hb_000003_210--Hb_003583_010 Hb_000190_170 Hb_000190_170 Hb_000003_210--Hb_000190_170 Hb_001159_230 Hb_001159_230 Hb_000003_210--Hb_001159_230 Hb_007811_020 Hb_007811_020 Hb_000003_210--Hb_007811_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0225132 0.255477 7.6441 17.355 0.0422055 0.239599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.257877 0.567887 0.372962 2.9862 4.47649

CAGE analysis