Hb_005257_010

Information

Type -
Description -
Location Contig5257: 8071-11101
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05320g
description POPTRDRAFT_551169; hypothetical protein
nr
ID XP_006386266.1
description hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
swissprot
ID Q94KE2
description Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2
trembl
ID B9GSN1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05320g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46982: 8872-11048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005257_010 0.0 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
2 Hb_001925_060 0.107137825 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
3 Hb_006031_010 0.1117154116 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
4 Hb_001614_060 0.1176018526 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
5 Hb_003768_050 0.1176200195 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
6 Hb_007083_030 0.1186901223 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
7 Hb_027337_020 0.1194215992 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
8 Hb_002213_020 0.1199047906 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
9 Hb_000189_320 0.1200071085 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
10 Hb_001005_130 0.1204311832 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
11 Hb_004327_040 0.1205239788 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
12 Hb_007441_160 0.1206972471 - - RNA binding protein, putative [Ricinus communis]
13 Hb_000007_010 0.1209389596 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
14 Hb_000731_010 0.1227188662 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
15 Hb_000590_050 0.1231550527 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
16 Hb_001488_180 0.1233901592 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
17 Hb_010712_050 0.1237119696 - - PREDICTED: protein ELC-like [Jatropha curcas]
18 Hb_007413_010 0.1239959656 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
19 Hb_000007_450 0.1244221675 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
20 Hb_002007_110 0.1252987089 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005257_010 Hb_005257_010 Hb_001925_060 Hb_001925_060 Hb_005257_010--Hb_001925_060 Hb_006031_010 Hb_006031_010 Hb_005257_010--Hb_006031_010 Hb_001614_060 Hb_001614_060 Hb_005257_010--Hb_001614_060 Hb_003768_050 Hb_003768_050 Hb_005257_010--Hb_003768_050 Hb_007083_030 Hb_007083_030 Hb_005257_010--Hb_007083_030 Hb_027337_020 Hb_027337_020 Hb_005257_010--Hb_027337_020 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040 Hb_009486_090 Hb_009486_090 Hb_006031_010--Hb_009486_090 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_012244_020 Hb_012244_020 Hb_006031_010--Hb_012244_020 Hb_001377_100 Hb_001377_100 Hb_006031_010--Hb_001377_100 Hb_001951_170 Hb_001951_170 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_010712_050 Hb_010712_050 Hb_001614_060--Hb_010712_050 Hb_001266_100 Hb_001266_100 Hb_001614_060--Hb_001266_100 Hb_001614_060--Hb_003768_050 Hb_001080_230 Hb_001080_230 Hb_001614_060--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_001614_060--Hb_003030_060 Hb_000025_280 Hb_000025_280 Hb_001614_060--Hb_000025_280 Hb_002234_090 Hb_002234_090 Hb_003768_050--Hb_002234_090 Hb_000347_390 Hb_000347_390 Hb_003768_050--Hb_000347_390 Hb_003768_050--Hb_000025_280 Hb_005551_020 Hb_005551_020 Hb_003768_050--Hb_005551_020 Hb_000017_220 Hb_000017_220 Hb_003768_050--Hb_000017_220 Hb_011618_090 Hb_011618_090 Hb_007083_030--Hb_011618_090 Hb_001377_160 Hb_001377_160 Hb_007083_030--Hb_001377_160 Hb_000579_230 Hb_000579_230 Hb_007083_030--Hb_000579_230 Hb_003943_010 Hb_003943_010 Hb_007083_030--Hb_003943_010 Hb_002815_030 Hb_002815_030 Hb_007083_030--Hb_002815_030 Hb_001946_340 Hb_001946_340 Hb_007083_030--Hb_001946_340 Hb_011485_060 Hb_011485_060 Hb_027337_020--Hb_011485_060 Hb_000189_320 Hb_000189_320 Hb_027337_020--Hb_000189_320 Hb_114151_020 Hb_114151_020 Hb_027337_020--Hb_114151_020 Hb_003683_010 Hb_003683_010 Hb_027337_020--Hb_003683_010 Hb_002213_020 Hb_002213_020 Hb_027337_020--Hb_002213_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98041 5.1125 2.73267 2.53722 1.41349 3.57676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0749 1.45518 2.2269 4.31624 5.19895

CAGE analysis