Hb_005263_010

Information

Type -
Description -
Location Contig5263: 4085-5125
Sequence    

Annotation

kegg
ID pop:POPTR_0003s196202
description POPTRDRAFT_555046; hypothetical protein
nr
ID XP_009791584.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
swissprot
ID Q5Z9N5
description Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 OS=Oryza sativa subsp. japonica GN=FON1 PE=1 SV=1
trembl
ID B9GWY1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s196202g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47009: 3100-3254 , PASA_asmbl_47010: 3256-3648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005263_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
2 Hb_005368_030 0.0677829469 - - -
3 Hb_000025_220 0.119582818 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
4 Hb_182507_010 0.1264366676 - - -
5 Hb_001660_140 0.129776734 - - -
6 Hb_009803_010 0.150772786 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
7 Hb_013040_010 0.1515248885 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
8 Hb_000270_540 0.1656006094 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
9 Hb_003641_010 0.1790568538 - - Pectinesterase-3 precursor, putative [Ricinus communis]
10 Hb_000733_260 0.1825809238 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
11 Hb_004907_030 0.2103850371 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
12 Hb_000025_080 0.2247365232 - - -
13 Hb_009119_010 0.2292849759 - - -
14 Hb_033312_110 0.2343004858 - - -
15 Hb_000010_040 0.2432623077 - - PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X2 [Citrus sinensis]
16 Hb_000092_050 0.2517452052 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
17 Hb_000574_310 0.2530745823 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
18 Hb_002016_030 0.2539814262 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010367_020 0.2573143055 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
20 Hb_005723_060 0.2639962304 - - -

Gene co-expression network

sample Hb_005263_010 Hb_005263_010 Hb_005368_030 Hb_005368_030 Hb_005263_010--Hb_005368_030 Hb_000025_220 Hb_000025_220 Hb_005263_010--Hb_000025_220 Hb_182507_010 Hb_182507_010 Hb_005263_010--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_005263_010--Hb_001660_140 Hb_009803_010 Hb_009803_010 Hb_005263_010--Hb_009803_010 Hb_013040_010 Hb_013040_010 Hb_005263_010--Hb_013040_010 Hb_005368_030--Hb_182507_010 Hb_005368_030--Hb_001660_140 Hb_005368_030--Hb_013040_010 Hb_000270_540 Hb_000270_540 Hb_005368_030--Hb_000270_540 Hb_004907_030 Hb_004907_030 Hb_005368_030--Hb_004907_030 Hb_000025_220--Hb_009803_010 Hb_000733_260 Hb_000733_260 Hb_000025_220--Hb_000733_260 Hb_000025_220--Hb_005368_030 Hb_003641_010 Hb_003641_010 Hb_000025_220--Hb_003641_010 Hb_000574_310 Hb_000574_310 Hb_000025_220--Hb_000574_310 Hb_182507_010--Hb_001660_140 Hb_182507_010--Hb_013040_010 Hb_182507_010--Hb_004907_030 Hb_182507_010--Hb_000270_540 Hb_033312_110 Hb_033312_110 Hb_182507_010--Hb_033312_110 Hb_001660_140--Hb_013040_010 Hb_001660_140--Hb_004907_030 Hb_001660_140--Hb_000270_540 Hb_001660_140--Hb_033312_110 Hb_122741_010 Hb_122741_010 Hb_009803_010--Hb_122741_010 Hb_009803_010--Hb_005368_030 Hb_010367_020 Hb_010367_020 Hb_009803_010--Hb_010367_020 Hb_009803_010--Hb_182507_010 Hb_013040_010--Hb_004907_030 Hb_013040_010--Hb_033312_110 Hb_013040_010--Hb_000270_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.69561 0 0.550796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis