Hb_005269_030

Information

Type -
Description -
Location Contig5269: 11792-13328
Sequence    

Annotation

kegg
ID rcu:RCOM_0554360
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_002525147.1
description cysteine protease, putative [Ricinus communis]
swissprot
ID Q9FGR9
description KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1
trembl
ID B9SGM8
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_0554360 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ervatamin-b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005269_030 0.0 - - cysteine protease, putative [Ricinus communis]
2 Hb_001414_130 0.2538794481 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_015909_010 0.271350321 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_011030_030 0.2903107977 - - PLC-like phosphodiesterases superfamily protein [Theobroma cacao]
5 Hb_002003_110 0.3090448691 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
6 Hb_003311_050 0.3091515003 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
7 Hb_094101_010 0.3243153563 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
8 Hb_001811_130 0.3298189844 - - -
9 Hb_004088_060 0.3379309745 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
10 Hb_000610_020 0.3413752227 - - unknown [Glycine max]
11 Hb_000123_250 0.3458443708 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
12 Hb_010565_020 0.3468186102 - - -
13 Hb_025214_090 0.3473842424 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_010874_030 0.3509953387 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
15 Hb_004976_060 0.3528185406 - - -
16 Hb_000482_060 0.3561620856 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
17 Hb_118453_010 0.3583474046 - - hypothetical protein VITISV_012360 [Vitis vinifera]
18 Hb_004712_170 0.3586137388 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
19 Hb_003647_010 0.3608646879 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
20 Hb_147996_010 0.3636544165 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005269_030 Hb_005269_030 Hb_001414_130 Hb_001414_130 Hb_005269_030--Hb_001414_130 Hb_015909_010 Hb_015909_010 Hb_005269_030--Hb_015909_010 Hb_011030_030 Hb_011030_030 Hb_005269_030--Hb_011030_030 Hb_002003_110 Hb_002003_110 Hb_005269_030--Hb_002003_110 Hb_003311_050 Hb_003311_050 Hb_005269_030--Hb_003311_050 Hb_094101_010 Hb_094101_010 Hb_005269_030--Hb_094101_010 Hb_001414_130--Hb_094101_010 Hb_001414_130--Hb_003311_050 Hb_000832_330 Hb_000832_330 Hb_001414_130--Hb_000832_330 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_018118_040 Hb_018118_040 Hb_001414_130--Hb_018118_040 Hb_001391_120 Hb_001391_120 Hb_015909_010--Hb_001391_120 Hb_015909_010--Hb_001414_130 Hb_001798_020 Hb_001798_020 Hb_015909_010--Hb_001798_020 Hb_000160_240 Hb_000160_240 Hb_015909_010--Hb_000160_240 Hb_005276_170 Hb_005276_170 Hb_015909_010--Hb_005276_170 Hb_000208_030 Hb_000208_030 Hb_011030_030--Hb_000208_030 Hb_003416_050 Hb_003416_050 Hb_011030_030--Hb_003416_050 Hb_089437_010 Hb_089437_010 Hb_011030_030--Hb_089437_010 Hb_027428_030 Hb_027428_030 Hb_011030_030--Hb_027428_030 Hb_000482_060 Hb_000482_060 Hb_011030_030--Hb_000482_060 Hb_089341_010 Hb_089341_010 Hb_002003_110--Hb_089341_010 Hb_027337_070 Hb_027337_070 Hb_002003_110--Hb_027337_070 Hb_000407_060 Hb_000407_060 Hb_002003_110--Hb_000407_060 Hb_004361_030 Hb_004361_030 Hb_002003_110--Hb_004361_030 Hb_172632_020 Hb_172632_020 Hb_002003_110--Hb_172632_020 Hb_000928_150 Hb_000928_150 Hb_003311_050--Hb_000928_150 Hb_009780_090 Hb_009780_090 Hb_003311_050--Hb_009780_090 Hb_003311_050--Hb_094101_010 Hb_010874_030 Hb_010874_030 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_083569_010 Hb_083569_010 Hb_094101_010--Hb_083569_010 Hb_094101_010--Hb_009780_090 Hb_021583_010 Hb_021583_010 Hb_094101_010--Hb_021583_010 Hb_094101_010--Hb_000928_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0817494 0.0318683 0 0.0427098 0.0607727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0383301 0 0.0308056 0

CAGE analysis