Hb_005269_060

Information

Type -
Description -
Location Contig5269: 25194-26879
Sequence    

Annotation

kegg
ID cam:101509334
description rac-like GTP-binding protein RAC2-like
nr
ID XP_004487185.1
description PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
swissprot
ID Q40220
description Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1
trembl
ID A0A067KIX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12225 PE=3 SV=1
Gene Ontology
ID GO:0005737
description rac-like gtp-binding protein rac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005269_060 0.0 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
2 Hb_049955_010 0.0614958653 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
3 Hb_000343_070 0.0622853529 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
4 Hb_001278_120 0.0720669167 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
5 Hb_011344_040 0.0746196765 - - PREDICTED: 21 kDa protein [Jatropha curcas]
6 Hb_004943_020 0.0749861326 - - cationic amino acid transporter, putative [Ricinus communis]
7 Hb_010172_040 0.0776007285 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
8 Hb_007113_060 0.0809931613 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
9 Hb_143629_170 0.0829412044 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
10 Hb_185608_010 0.0841581263 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
11 Hb_009252_070 0.0848843851 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
12 Hb_061256_020 0.0866084155 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
13 Hb_057862_010 0.0918503322 - - protein binding protein, putative [Ricinus communis]
14 Hb_128986_010 0.0920505393 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000057_090 0.0950781419 - - hypothetical protein RCOM_1494490 [Ricinus communis]
16 Hb_007382_110 0.0954816924 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
17 Hb_010193_020 0.0955130457 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
18 Hb_162450_010 0.0955398559 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
19 Hb_004650_110 0.0966543759 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
20 Hb_000707_090 0.0969964845 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]

Gene co-expression network

sample Hb_005269_060 Hb_005269_060 Hb_049955_010 Hb_049955_010 Hb_005269_060--Hb_049955_010 Hb_000343_070 Hb_000343_070 Hb_005269_060--Hb_000343_070 Hb_001278_120 Hb_001278_120 Hb_005269_060--Hb_001278_120 Hb_011344_040 Hb_011344_040 Hb_005269_060--Hb_011344_040 Hb_004943_020 Hb_004943_020 Hb_005269_060--Hb_004943_020 Hb_010172_040 Hb_010172_040 Hb_005269_060--Hb_010172_040 Hb_185608_010 Hb_185608_010 Hb_049955_010--Hb_185608_010 Hb_162450_010 Hb_162450_010 Hb_049955_010--Hb_162450_010 Hb_057862_010 Hb_057862_010 Hb_049955_010--Hb_057862_010 Hb_049955_010--Hb_000343_070 Hb_005532_080 Hb_005532_080 Hb_049955_010--Hb_005532_080 Hb_000343_070--Hb_001278_120 Hb_000343_070--Hb_004943_020 Hb_000343_070--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000343_070--Hb_000707_090 Hb_001278_120--Hb_004943_020 Hb_004459_010 Hb_004459_010 Hb_001278_120--Hb_004459_010 Hb_128986_010 Hb_128986_010 Hb_001278_120--Hb_128986_010 Hb_003855_060 Hb_003855_060 Hb_001278_120--Hb_003855_060 Hb_000326_120 Hb_000326_120 Hb_001278_120--Hb_000326_120 Hb_011344_040--Hb_185608_010 Hb_010193_020 Hb_010193_020 Hb_011344_040--Hb_010193_020 Hb_000227_360 Hb_000227_360 Hb_011344_040--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_011344_040--Hb_003858_010 Hb_001357_290 Hb_001357_290 Hb_011344_040--Hb_001357_290 Hb_011344_040--Hb_057862_010 Hb_004943_020--Hb_003855_060 Hb_143629_170 Hb_143629_170 Hb_004943_020--Hb_143629_170 Hb_007904_150 Hb_007904_150 Hb_004943_020--Hb_007904_150 Hb_004943_020--Hb_004459_010 Hb_002809_180 Hb_002809_180 Hb_010172_040--Hb_002809_180 Hb_000421_040 Hb_000421_040 Hb_010172_040--Hb_000421_040 Hb_000172_270 Hb_000172_270 Hb_010172_040--Hb_000172_270 Hb_010172_040--Hb_000707_090 Hb_010172_040--Hb_001278_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0475205 0.0914397 2.98281 10.1173 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.207049 6.19602

CAGE analysis