Hb_005269_080

Information

Type -
Description -
Location Contig5269: 53092-55871
Sequence    

Annotation

kegg
ID rcu:RCOM_0554420
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002525153.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9FJH0
description Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1
trembl
ID B9SGN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0554420 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba1f-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47022: 53284-55856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005269_080 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002303_060 0.0590541487 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000922_040 0.065763311 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
4 Hb_000254_050 0.0727124034 - - hypothetical protein VITISV_010510 [Vitis vinifera]
5 Hb_000384_120 0.072860474 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
6 Hb_001053_140 0.0746135569 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
7 Hb_000701_100 0.0759432796 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
8 Hb_002000_140 0.076310425 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
9 Hb_003376_190 0.0820494337 - - syntaxin, putative [Ricinus communis]
10 Hb_072922_020 0.0821379868 - - SNARE-like superfamily protein [Theobroma cacao]
11 Hb_003494_050 0.0832496108 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
12 Hb_011485_020 0.0844528781 - - protein with unknown function [Ricinus communis]
13 Hb_002110_200 0.0849145258 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000189_240 0.0859755206 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
15 Hb_000107_300 0.0877581904 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
16 Hb_001410_060 0.0877935791 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
17 Hb_005306_070 0.0883086082 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
18 Hb_000215_330 0.0913318516 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
19 Hb_002324_010 0.0913723378 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
20 Hb_000735_090 0.0913758188 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]

Gene co-expression network

sample Hb_005269_080 Hb_005269_080 Hb_002303_060 Hb_002303_060 Hb_005269_080--Hb_002303_060 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_002110_200 Hb_002110_200 Hb_000254_050--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_000254_050--Hb_001512_080 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000789_230 Hb_000789_230 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_001329_150 Hb_001329_150 Hb_001053_140--Hb_001329_150 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_001053_140--Hb_000189_240 Hb_001057_040 Hb_001057_040 Hb_000701_100--Hb_001057_040 Hb_004899_370 Hb_004899_370 Hb_000701_100--Hb_004899_370 Hb_000805_240 Hb_000805_240 Hb_000701_100--Hb_000805_240 Hb_000005_090 Hb_000005_090 Hb_000701_100--Hb_000005_090 Hb_003414_050 Hb_003414_050 Hb_000701_100--Hb_003414_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3813 11.2607 20.2465 39.3894 9.3208 20.7251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3869 75.5663 38.408 23.9281 21.403

CAGE analysis