Hb_005271_030

Information

Type -
Description -
Location Contig5271: 23446-28627
Sequence    

Annotation

kegg
ID rcu:RCOM_1686400
description copper-transporting atpase p-type, putative (EC:3.6.3.4)
nr
ID XP_002509783.1
description copper-transporting atpase p-type, putative [Ricinus communis]
swissprot
ID Q9SH30
description Probable copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=1 SV=2
trembl
ID B9RC99
description Copper-transporting atpase p-type, putative OS=Ricinus communis GN=RCOM_1686400 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable copper-transporting atpase hma5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47045: 23524-28405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_030 0.0 - - copper-transporting atpase p-type, putative [Ricinus communis]
2 Hb_029464_010 0.0819053727 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
3 Hb_009193_130 0.0902174725 - - hypothetical protein RCOM_1620550 [Ricinus communis]
4 Hb_001146_070 0.0902262964 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
5 Hb_007158_030 0.0933078074 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_002506_110 0.1006748436 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
7 Hb_001017_100 0.1024287452 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
8 Hb_000329_620 0.1078983919 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
9 Hb_000856_100 0.1085510748 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
10 Hb_064201_010 0.1173165527 - - hypothetical protein RCOM_1685970 [Ricinus communis]
11 Hb_098315_100 0.1184935422 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
12 Hb_001846_080 0.1244399663 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
13 Hb_003226_170 0.1248574049 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
14 Hb_000441_230 0.1256885744 - - unnamed protein product [Coffea canephora]
15 Hb_001268_230 0.1345454826 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
16 Hb_000376_150 0.1378955804 - - O-acyltransferase WSD1 [Gossypium arboreum]
17 Hb_000050_120 0.1389580428 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
18 Hb_003540_140 0.1405627229 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
19 Hb_000565_020 0.1446213101 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
20 Hb_000365_350 0.1449927656 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]

Gene co-expression network

sample Hb_005271_030 Hb_005271_030 Hb_029464_010 Hb_029464_010 Hb_005271_030--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_005271_030--Hb_009193_130 Hb_001146_070 Hb_001146_070 Hb_005271_030--Hb_001146_070 Hb_007158_030 Hb_007158_030 Hb_005271_030--Hb_007158_030 Hb_002506_110 Hb_002506_110 Hb_005271_030--Hb_002506_110 Hb_001017_100 Hb_001017_100 Hb_005271_030--Hb_001017_100 Hb_029464_010--Hb_007158_030 Hb_029464_010--Hb_009193_130 Hb_000329_620 Hb_000329_620 Hb_029464_010--Hb_000329_620 Hb_029464_010--Hb_001146_070 Hb_000856_100 Hb_000856_100 Hb_029464_010--Hb_000856_100 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_000856_100 Hb_098315_100 Hb_098315_100 Hb_009193_130--Hb_098315_100 Hb_009193_130--Hb_002506_110 Hb_000175_530 Hb_000175_530 Hb_001146_070--Hb_000175_530 Hb_064201_010 Hb_064201_010 Hb_001146_070--Hb_064201_010 Hb_001146_070--Hb_007158_030 Hb_001146_070--Hb_001017_100 Hb_007158_030--Hb_000329_620 Hb_007158_030--Hb_002506_110 Hb_000603_200 Hb_000603_200 Hb_007158_030--Hb_000603_200 Hb_000376_150 Hb_000376_150 Hb_002506_110--Hb_000376_150 Hb_002506_110--Hb_098315_100 Hb_002506_110--Hb_000856_100 Hb_001017_100--Hb_002506_110 Hb_000161_100 Hb_000161_100 Hb_001017_100--Hb_000161_100 Hb_000018_160 Hb_000018_160 Hb_001017_100--Hb_000018_160 Hb_000441_230 Hb_000441_230 Hb_001017_100--Hb_000441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
514.734 24.575 4.06423 22.9916 666.916 621.729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
210.968 61.2767 94.8673 19.2035 3.64679

CAGE analysis