Hb_005271_050

Information

Type -
Description -
Location Contig5271: 38289-41530
Sequence    

Annotation

kegg
ID tup:102488849
description TUBB4A; tubulin, beta 4A class IVa
nr
ID KHG25436.1
description Tubulin beta-8 chain -like protein [Gossypium arboreum]
swissprot
ID P29516
description Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2
trembl
ID A0A0B0PPV7
description Tubulin beta-8 chain-like protein OS=Gossypium arboreum GN=F383_06752 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-2c chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47047: 37984-41487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_050 0.0 - - Tubulin beta-8 chain -like protein [Gossypium arboreum]
2 Hb_004117_160 0.1902438321 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
3 Hb_002615_110 0.1935830142 - - PREDICTED: uncharacterized protein LOC105628989 [Jatropha curcas]
4 Hb_000179_220 0.19462314 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
5 Hb_002304_020 0.1991616117 - - -
6 Hb_004994_050 0.201449414 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
7 Hb_150023_010 0.2065915484 - - 50S ribosomal protein L2, putative [Ricinus communis]
8 Hb_018292_010 0.2072625586 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
9 Hb_006373_040 0.2101109507 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
10 Hb_000390_200 0.211684626 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
11 Hb_007722_010 0.2123975631 - - PREDICTED: kinesin light chain [Jatropha curcas]
12 Hb_003206_120 0.2125604424 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
13 Hb_010128_100 0.2131436903 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
14 Hb_021596_030 0.2131645254 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
15 Hb_002739_020 0.2140559058 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
16 Hb_000005_260 0.2145128838 - - transferase, putative [Ricinus communis]
17 Hb_002276_020 0.2161743494 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
18 Hb_007672_060 0.2199064788 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
19 Hb_004052_040 0.2201103916 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
20 Hb_000415_040 0.2203178398 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005271_050 Hb_005271_050 Hb_004117_160 Hb_004117_160 Hb_005271_050--Hb_004117_160 Hb_002615_110 Hb_002615_110 Hb_005271_050--Hb_002615_110 Hb_000179_220 Hb_000179_220 Hb_005271_050--Hb_000179_220 Hb_002304_020 Hb_002304_020 Hb_005271_050--Hb_002304_020 Hb_004994_050 Hb_004994_050 Hb_005271_050--Hb_004994_050 Hb_150023_010 Hb_150023_010 Hb_005271_050--Hb_150023_010 Hb_000107_200 Hb_000107_200 Hb_004117_160--Hb_000107_200 Hb_001948_130 Hb_001948_130 Hb_004117_160--Hb_001948_130 Hb_003010_020 Hb_003010_020 Hb_004117_160--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_004117_160--Hb_032050_040 Hb_000022_020 Hb_000022_020 Hb_004117_160--Hb_000022_020 Hb_152202_010 Hb_152202_010 Hb_004117_160--Hb_152202_010 Hb_000002_340 Hb_000002_340 Hb_002615_110--Hb_000002_340 Hb_003057_100 Hb_003057_100 Hb_002615_110--Hb_003057_100 Hb_000613_090 Hb_000613_090 Hb_002615_110--Hb_000613_090 Hb_000487_110 Hb_000487_110 Hb_002615_110--Hb_000487_110 Hb_001307_220 Hb_001307_220 Hb_002615_110--Hb_001307_220 Hb_004242_060 Hb_004242_060 Hb_002615_110--Hb_004242_060 Hb_005023_010 Hb_005023_010 Hb_000179_220--Hb_005023_010 Hb_001225_080 Hb_001225_080 Hb_000179_220--Hb_001225_080 Hb_005504_060 Hb_005504_060 Hb_000179_220--Hb_005504_060 Hb_000415_040 Hb_000415_040 Hb_000179_220--Hb_000415_040 Hb_000300_630 Hb_000300_630 Hb_000179_220--Hb_000300_630 Hb_004117_110 Hb_004117_110 Hb_000179_220--Hb_004117_110 Hb_011316_090 Hb_011316_090 Hb_002304_020--Hb_011316_090 Hb_006373_040 Hb_006373_040 Hb_002304_020--Hb_006373_040 Hb_002188_120 Hb_002188_120 Hb_002304_020--Hb_002188_120 Hb_001369_750 Hb_001369_750 Hb_002304_020--Hb_001369_750 Hb_001080_090 Hb_001080_090 Hb_002304_020--Hb_001080_090 Hb_000281_090 Hb_000281_090 Hb_002304_020--Hb_000281_090 Hb_004531_140 Hb_004531_140 Hb_004994_050--Hb_004531_140 Hb_007919_100 Hb_007919_100 Hb_004994_050--Hb_007919_100 Hb_000579_120 Hb_000579_120 Hb_004994_050--Hb_000579_120 Hb_002947_030 Hb_002947_030 Hb_004994_050--Hb_002947_030 Hb_002073_190 Hb_002073_190 Hb_004994_050--Hb_002073_190 Hb_132840_110 Hb_132840_110 Hb_004994_050--Hb_132840_110 Hb_005527_020 Hb_005527_020 Hb_150023_010--Hb_005527_020 Hb_150023_010--Hb_004117_160 Hb_000991_070 Hb_000991_070 Hb_150023_010--Hb_000991_070 Hb_150023_010--Hb_000107_200 Hb_002079_050 Hb_002079_050 Hb_150023_010--Hb_002079_050 Hb_000825_030 Hb_000825_030 Hb_150023_010--Hb_000825_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3432 24.998 5.77912 47.3232 25.4571 38.2234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.4257 21.5209 7.37399 5.8067 41.5746

CAGE analysis