Hb_005271_070

Information

Type -
Description -
Location Contig5271: 44893-48858
Sequence    

Annotation

kegg
ID rcu:RCOM_1686350
description RNA-binding protein nob1, putative
nr
ID XP_012086932.1
description PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
swissprot
ID Q9ULX3
description RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1
trembl
ID A0A067JNJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20613 PE=4 SV=1
Gene Ontology
ID GO:0005737
description rna-binding protein nob1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47049: 44984-46648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_070 0.0 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
2 Hb_011537_040 0.0788495591 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
3 Hb_000258_410 0.0820131209 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
4 Hb_164010_020 0.0838503115 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
5 Hb_005741_020 0.0866442927 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
6 Hb_000500_290 0.0889808058 - - bromodomain-containing protein, putative [Ricinus communis]
7 Hb_004374_010 0.092809005 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
8 Hb_044662_040 0.0973622852 - - -
9 Hb_001956_120 0.1001177218 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009615_110 0.1014393909 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
11 Hb_004232_010 0.1023285875 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
12 Hb_001348_140 0.1092996952 - - conserved hypothetical protein [Ricinus communis]
13 Hb_025048_030 0.1095370017 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
14 Hb_002851_060 0.1104665891 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
15 Hb_000282_150 0.1143295666 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
16 Hb_006452_190 0.1150792341 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_010298_020 0.1158832386 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
18 Hb_001009_050 0.119765443 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
19 Hb_004096_170 0.1202290654 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
20 Hb_004502_030 0.1207992095 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_005271_070 Hb_005271_070 Hb_011537_040 Hb_011537_040 Hb_005271_070--Hb_011537_040 Hb_000258_410 Hb_000258_410 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_004374_010 Hb_004374_010 Hb_005271_070--Hb_004374_010 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_011537_040--Hb_004374_010 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_008406_160 Hb_008406_160 Hb_000258_410--Hb_008406_160 Hb_000997_060 Hb_000997_060 Hb_000258_410--Hb_000997_060 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_000176_110 Hb_000176_110 Hb_000258_410--Hb_000176_110 Hb_025557_020 Hb_025557_020 Hb_164010_020--Hb_025557_020 Hb_000318_140 Hb_000318_140 Hb_164010_020--Hb_000318_140 Hb_009615_110 Hb_009615_110 Hb_164010_020--Hb_009615_110 Hb_009913_050 Hb_009913_050 Hb_164010_020--Hb_009913_050 Hb_164010_020--Hb_000258_410 Hb_001623_370 Hb_001623_370 Hb_005741_020--Hb_001623_370 Hb_011609_030 Hb_011609_030 Hb_005741_020--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_005741_020--Hb_000714_020 Hb_005741_020--Hb_001956_120 Hb_004232_010 Hb_004232_010 Hb_005741_020--Hb_004232_010 Hb_000500_290--Hb_000282_150 Hb_001348_140 Hb_001348_140 Hb_000500_290--Hb_001348_140 Hb_000500_290--Hb_004232_010 Hb_000500_290--Hb_009615_110 Hb_000500_290--Hb_011537_040 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.09 41.9595 19.4469 9.37113 126.695 134.064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
128.477 59.9929 20.8486 23.081 11.5839

CAGE analysis