Hb_005271_160

Information

Type -
Description -
Location Contig5271: 108103-113987
Sequence    

Annotation

kegg
ID rcu:RCOM_1686120
description hypothetical protein
nr
ID XP_012086950.1
description PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
swissprot
ID Q9JZ44
description 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B (strain MC58) GN=rpsA PE=1 SV=1
trembl
ID A0A067JRL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20624 PE=4 SV=1
Gene Ontology
ID GO:0009507
description s1 rna-binding domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47059: 108118-113928 , PASA_asmbl_47060: 111860-113733 , PASA_asmbl_47061: 112948-113624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_160 0.0 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
2 Hb_008206_060 0.1123870396 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_065525_130 0.1139656226 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_008092_050 0.1205472218 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
5 Hb_003900_030 0.1242380582 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
6 Hb_012098_150 0.1308339193 - - ARC5 protein [Manihot esculenta]
7 Hb_001959_240 0.132438809 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_002027_090 0.1331192702 - - -
9 Hb_004116_160 0.1334275636 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
10 Hb_000363_060 0.1364720072 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_006911_070 0.1367904461 - - 50S ribosomal protein L1p, putative [Ricinus communis]
12 Hb_048141_030 0.1388050293 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
13 Hb_001408_030 0.1397920844 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
14 Hb_001396_240 0.1410671742 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
15 Hb_002105_010 0.1412328638 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001307_040 0.1419335981 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
17 Hb_000445_140 0.1431686118 - - hypothetical protein RCOM_0561550 [Ricinus communis]
18 Hb_031042_060 0.1438421454 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_005048_140 0.1441839433 - - conserved hypothetical protein [Ricinus communis]
20 Hb_015531_030 0.1459307231 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005271_160 Hb_005271_160 Hb_008206_060 Hb_008206_060 Hb_005271_160--Hb_008206_060 Hb_065525_130 Hb_065525_130 Hb_005271_160--Hb_065525_130 Hb_008092_050 Hb_008092_050 Hb_005271_160--Hb_008092_050 Hb_003900_030 Hb_003900_030 Hb_005271_160--Hb_003900_030 Hb_012098_150 Hb_012098_150 Hb_005271_160--Hb_012098_150 Hb_001959_240 Hb_001959_240 Hb_005271_160--Hb_001959_240 Hb_000015_100 Hb_000015_100 Hb_008206_060--Hb_000015_100 Hb_031284_070 Hb_031284_070 Hb_008206_060--Hb_031284_070 Hb_010812_050 Hb_010812_050 Hb_008206_060--Hb_010812_050 Hb_000331_130 Hb_000331_130 Hb_008206_060--Hb_000331_130 Hb_000363_060 Hb_000363_060 Hb_008206_060--Hb_000363_060 Hb_000445_140 Hb_000445_140 Hb_008206_060--Hb_000445_140 Hb_000085_140 Hb_000085_140 Hb_065525_130--Hb_000085_140 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_065525_130--Hb_008206_060 Hb_001408_030 Hb_001408_030 Hb_008092_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_008092_050--Hb_008092_060 Hb_005618_150 Hb_005618_150 Hb_008092_050--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_008092_050--Hb_001307_040 Hb_001437_120 Hb_001437_120 Hb_008092_050--Hb_001437_120 Hb_006911_070 Hb_006911_070 Hb_008092_050--Hb_006911_070 Hb_005883_020 Hb_005883_020 Hb_003900_030--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_003900_030--Hb_002233_130 Hb_004254_100 Hb_004254_100 Hb_003900_030--Hb_004254_100 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_001916_100 Hb_001916_100 Hb_003900_030--Hb_001916_100 Hb_003900_030--Hb_000363_060 Hb_000071_150 Hb_000071_150 Hb_012098_150--Hb_000071_150 Hb_001541_100 Hb_001541_100 Hb_012098_150--Hb_001541_100 Hb_012098_150--Hb_000445_140 Hb_006570_010 Hb_006570_010 Hb_012098_150--Hb_006570_010 Hb_003398_100 Hb_003398_100 Hb_012098_150--Hb_003398_100 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_006618_070 Hb_006618_070 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_002498_170 Hb_002498_170 Hb_001959_240--Hb_002498_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7973 14.1685 32.9357 14.1325 15.5711 24.7254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57346 3.53915 5.41662 4.59649 40.8091

CAGE analysis