Hb_005271_220

Information

Type -
Description -
Location Contig5271: 143886-148664
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09040g
description POPTRDRAFT_640520; transcription initiation factor-related family protein
nr
ID XP_012086956.1
description PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
swissprot
ID Q54KJ8
description General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1
trembl
ID A0A067JRL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20629 PE=4 SV=1
Gene Ontology
ID GO:0005673
description general transcription factor iie subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47070: 143816-148620 , PASA_asmbl_47071: 147434-148625
cDNA
(Sanger)
(ID:Location)		 043_G11.ab1: 147434-148625

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_220 0.0 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
2 Hb_005730_120 0.0539646636 - - PREDICTED: protein WHI4 [Jatropha curcas]
3 Hb_002232_410 0.0620331343 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
4 Hb_002303_070 0.0620407372 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
5 Hb_032808_010 0.064041414 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
6 Hb_008511_120 0.0656886669 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
7 Hb_000403_050 0.0663633629 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
8 Hb_003125_120 0.0667158428 - - PREDICTED: TITAN-like protein [Jatropha curcas]
9 Hb_000331_550 0.0671864487 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
10 Hb_001163_050 0.0674023056 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
11 Hb_000053_110 0.0679504169 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002311_180 0.0695577463 - - drought-responsive family protein [Populus trichocarpa]
13 Hb_008453_140 0.0719381478 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
14 Hb_000521_320 0.0721469808 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
15 Hb_003001_080 0.072615133 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
16 Hb_000152_500 0.0731169086 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
17 Hb_001142_030 0.0732582979 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
18 Hb_002205_110 0.0733481891 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000373_070 0.0736195728 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
20 Hb_000732_010 0.0745110404 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_005271_220 Hb_005271_220 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_005730_120--Hb_032808_010 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_008725_230 Hb_008725_230 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_002232_410--Hb_000732_010 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_002303_070--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_032808_010--Hb_008511_120 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_008511_120--Hb_002232_410 Hb_003918_010 Hb_003918_010 Hb_008511_120--Hb_003918_010 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_008511_120--Hb_005357_080 Hb_003125_120 Hb_003125_120 Hb_000403_050--Hb_003125_120 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_000334_280 Hb_000334_280 Hb_000403_050--Hb_000334_280 Hb_156973_010 Hb_156973_010 Hb_000403_050--Hb_156973_010 Hb_001163_050 Hb_001163_050 Hb_000403_050--Hb_001163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2753 19.6121 24.0512 22.2431 20.7953 20.9921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.4463 28.2904 19.2448 18.5441 17.2902

CAGE analysis