Hb_005271_230

Information

Type -
Description -
Location Contig5271: 149252-152652
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012392mg
description hypothetical protein
nr
ID XP_012086961.1
description PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47073: 148892-151111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_230 0.0 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
2 Hb_006422_030 0.1516336984 - - -
3 Hb_000566_180 0.1732906062 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
4 Hb_050034_010 0.182940945 - - PREDICTED: cullin-1 [Jatropha curcas]
5 Hb_060391_010 0.1907040128 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_006910_050 0.1976769451 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
7 Hb_002611_030 0.2017013598 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
8 Hb_007456_020 0.209064296 - - unknown [Lotus japonicus]
9 Hb_000366_020 0.2220057011 - - -
10 Hb_001059_140 0.2276027728 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
11 Hb_003642_020 0.2305781769 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
12 Hb_060458_010 0.2310107725 - - conserved hypothetical protein [Ricinus communis]
13 Hb_086765_010 0.23467757 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
14 Hb_102591_010 0.234894307 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
15 Hb_007527_070 0.2359683408 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
16 Hb_000098_300 0.2360954914 - - -
17 Hb_048702_010 0.2375785903 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
18 Hb_003030_040 0.2382380113 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
19 Hb_008206_090 0.2419411054 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
20 Hb_141296_010 0.2421099119 - - -

Gene co-expression network

sample Hb_005271_230 Hb_005271_230 Hb_006422_030 Hb_006422_030 Hb_005271_230--Hb_006422_030 Hb_000566_180 Hb_000566_180 Hb_005271_230--Hb_000566_180 Hb_050034_010 Hb_050034_010 Hb_005271_230--Hb_050034_010 Hb_060391_010 Hb_060391_010 Hb_005271_230--Hb_060391_010 Hb_006910_050 Hb_006910_050 Hb_005271_230--Hb_006910_050 Hb_002611_030 Hb_002611_030 Hb_005271_230--Hb_002611_030 Hb_060458_010 Hb_060458_010 Hb_006422_030--Hb_060458_010 Hb_006422_030--Hb_060391_010 Hb_094437_040 Hb_094437_040 Hb_006422_030--Hb_094437_040 Hb_006422_030--Hb_050034_010 Hb_001059_140 Hb_001059_140 Hb_006422_030--Hb_001059_140 Hb_057796_010 Hb_057796_010 Hb_000566_180--Hb_057796_010 Hb_001404_080 Hb_001404_080 Hb_000566_180--Hb_001404_080 Hb_006274_040 Hb_006274_040 Hb_000566_180--Hb_006274_040 Hb_012490_110 Hb_012490_110 Hb_000566_180--Hb_012490_110 Hb_000566_180--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_050034_010--Hb_007456_020 Hb_102591_010 Hb_102591_010 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_165402_010 Hb_165402_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_050034_010--Hb_060391_010 Hb_060391_010--Hb_102591_010 Hb_060391_010--Hb_165402_010 Hb_000679_200 Hb_000679_200 Hb_060391_010--Hb_000679_200 Hb_060391_010--Hb_007456_020 Hb_000366_020 Hb_000366_020 Hb_060391_010--Hb_000366_020 Hb_130367_010 Hb_130367_010 Hb_006910_050--Hb_130367_010 Hb_007527_070 Hb_007527_070 Hb_006910_050--Hb_007527_070 Hb_022891_010 Hb_022891_010 Hb_006910_050--Hb_022891_010 Hb_047691_010 Hb_047691_010 Hb_006910_050--Hb_047691_010 Hb_006910_050--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_002611_030--Hb_017014_010 Hb_100137_010 Hb_100137_010 Hb_002611_030--Hb_100137_010 Hb_004466_060 Hb_004466_060 Hb_002611_030--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_002611_030--Hb_048702_010 Hb_009083_030 Hb_009083_030 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160359 2.11772 0.616295 11.3107 0.811241 9.20626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285946 0.224812 0.67487 2.83262 4.42079

CAGE analysis